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Bioinformatics Research and Applications

5th International Symposium, ISBRA 2009 Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings

  • Conference proceedings
  • © 2009

Overview

Editors:
  1. Ion Măndoiu

    1. Computer Science & Engineering Department, University of Connecticut, Storrs, USA

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  2. Giri Narasimhan

    1. Bioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, USA

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    You can also search for this editor in PubMed   Google Scholar

  3. Yanqing Zhang

    1. Department of Computer Science, Georgia State University, Atlanta, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 5542)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: ISBRA 2009.

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Table of contents (31 papers)

  1. Front Matter

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  2. Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk)

    • Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrei A. Mironov, Alexandra B. Rakhmaninova et al.
    Pages 1-4

  3. Integrating Multiple-Platform Expression Data through Gene Set Features

    • Matěj Holec, Filip Železný, Jiří Kléma, Jakub Tolar
    Pages 5-17

  4. Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression

    • Brian E. Howard, Beate Sick, Steffen Heber
    Pages 18-27

  5. Mean Square Residue Biclustering with Missing Data and Row Inversions

    • Stefan Gremalschi, Gulsah Altun, Irina Astrovskaya, Alexander Zelikovsky
    Pages 28-39

  6. Using Gene Expression Modeling to Determine Biological Relevance of Putative Regulatory Networks

    • Peter Larsen, Yang Dai
    Pages 40-51

  7. Querying Protein-Protein Interaction Networks

    • Guillaume Blin, Florian Sikora, Stéphane Vialette
    Pages 52-62

  8. Integrative Approach for Combining TNFα-NFκB Mathematical Model to a Protein Interaction Connectivity Map

    • Mahesh Visvanathan, Bernhard Pfeifer, Christian Baumgartner, Bernhard Tilg, Gerald Henry Lushington
    Pages 63-74

  9. Hierarchical Organization of Functional Modules in Weighted Protein Interaction Networks Using Clustering Coefficient

    • Min Li, Jianxin Wang, Jianer Chen, Yi Pan
    Pages 75-86

  10. Bioinformatics Challenges in Translational Research

    • Nicholas F. Tsinoremas
    Pages 87-87

  11. Untangling Tanglegrams: Comparing Trees by Their Drawings

    • Balaji Venkatachalam, Jim Apple, Katherine St. John, Dan Gusfield
    Pages 88-99

  12. An Experimental Analysis of Consensus Tree Algorithms for Large-Scale Tree Collections

    • Seung-Jin Sul, Tiffani L. Williams
    Pages 100-111

  13. Counting Faces in Split Networks

    • Lichen Bao, Sergey Bereg
    Pages 112-123

  14. Relationship between Amino Acids Sequences and Protein Structures: Folding Patterns and Sequence Patterns

    • Alexander Kister
    Pages 124-134

  15. Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots

    • Sanguthevar Rajasekaran, Sahar Al Seesi, Reda Ammar
    Pages 135-147

  16. Efficient Algorithms for Self Assembling Triangular and Other Nano Structures

    • Vamsi Kundeti, Sanguthevar Rajasekaran
    Pages 148-158

  17. Motif Construction from High–Throughput SELEX Data

    • Esko Ukkonen
    Pages 159-159

  18. Rearrangement Phylogeny of Genomes in Contig Form

    • Adriana Muñoz, David Sankoff
    Pages 160-172

  19. Prediction of Contiguous Regions in the Amniote Ancestral Genome

    • Aïda Ouangraoua, Frédéric Boyer, Andrew McPherson, Éric Tannier, Cedric Chauve
    Pages 173-185

  20. Pure Parsimony Xor Haplotyping

    • Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi
    Pages 186-197
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  1. Bioinformatics Research and Applications

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About this book

This book constitutes the refereed proceedings of the 5th International Symposium on Bioinformatics Research and Applications, ISBRA 2009, held in Fort Lauderdale, FL, USA, in May 2009. The 26 revised full papers presented together four invited papers were carefully reviewed and selected from a total of 55 submissions. The papers cover a wide range of topics, including clustering and classification, gene expression analysis, gene networks, genome analysis, motif finding, pathways, protein structure prediction, protein domain interactions, phylogenetics, and software tools.

Editors and Affiliations

  • Computer Science & Engineering Department, University of Connecticut, Storrs, USA

    Ion Măndoiu

  • Bioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, USA

    Giri Narasimhan

  • Department of Computer Science, Georgia State University, Atlanta, USA

    Yanqing Zhang

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