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Computational Biology

First International Conference on Biology, Informatics, and Mathematics, JOBIM 2000 Montpellier, France, May 3-5, 2000 Selected Papers

  • Conference proceedings
  • © 2001

Overview

Editors:
  1. Olivier Gascuel

    1. Laboratoire d’Informatique, de Robotique et de Microelectronique de Montpellier, Montpellier Cedex 5, France

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    You can also search for this editor in PubMed   Google Scholar

  2. Marie-France Sagot

    1. Laboratoire d’Algorithmique Combinatoire, Institut Pasteur, Paris Cedex 15, France

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 2066)

Included in the following conference series:

Conference proceedings info: JOBIM 2000.

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Table of contents (13 papers)

  1. Front Matter

    Pages I-X
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  2. Speeding Up the DIALIGN Multiple Alignment Program by Using the ‘Greedy Alignment of BIOlogical Sequences LIBrary’ (GABIOS-LIB)

    • Saïd Abdeddaïm, Burkhard Morgenstern
    Pages 1-11

  3. GeMCore, a Knowledge Base Dedicated to Mapping Mammalian Genomes

    • Gisèle Bronner, Bruno Spataro, Christian Gautier, François Rechenmann
    Pages 12-23

  4. Optimal Agreement Supertrees

    • David Bryant
    Pages 24-31

  5. Segmentation by Maximal Predictive Partitioning According to Composition Biases

    • Laurent Guéguen
    Pages 32-44

  6. Can We Have Confidence in a Tree Representation?

    • Alain Guénoche, Henri Garreta
    Pages 45-56

  7. Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition

    • Vsevolod Makeev, Vasily Ramensky, Mikhail Gelfand, Mikhail Roytberg, Vladimir Tumanyan
    Pages 57-73

  8. Exact and Asymptotic Distribution of the Local Score of One i.i.d. Random Sequence

    • Sabine Mercier, Dominique Cellier, François Charlot, Jean-Jacques Daudin
    Pages 74-83

  9. Phylogenetic Reconstruction Algorithms Based on Weighted 4-Trees

    • Vincent Ranwez, Olivier Gascuel
    Pages 84-98

  10. Computational Complexity of Word Counting

    • Mireille Régnier
    Pages 99-110

  11. Eugène: An Eukaryotic Gene Finder That Combines Several Sources of Evidence

    • Thomas Schiex, Annick Moisan, Pierre Rouzé
    Pages 111-125

  12. Tree Reconstruction via a Closure Operation on Partial Splits

    • Charles Semple, Mike Steel
    Pages 126-134

  13. InterDB, a Prediction-Oriented Protein Interaction Database for C. elegans

    • Nicolas Thierry-Mieg, Laurent Trilling
    Pages 135-146

  14. Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data

    • Jacques van Helden, David Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana Wodak
    Pages 147-163

  15. Back Matter

    Pages 165-165
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  1. Computational Biology

Keywords

About this book

This book presents a selection of revised full papers accepted for presentation at the First International Conference on Biology, Informatics, and Mathematics, JOBIM 2000, held in Montpellier, France, in May 2000.
The 13 papers included in the book were selected after two rounds of reviewing and revision from a total of 67 submissions. Among the topics addressed are algorithms, comparative genomics, evolution, phylogeny, databases, knowledge processing, genome anotation, graph theory, combinatorial mathematics, macromolecular structures, RNA and proteins, metabolic pathways and regulatory networks, and statistics and classification.

Editors and Affiliations

  • Laboratoire d’Informatique, de Robotique et de Microelectronique de Montpellier, Montpellier Cedex 5, France

    Olivier Gascuel

  • Laboratoire d’Algorithmique Combinatoire, Institut Pasteur, Paris Cedex 15, France

    Marie-France Sagot

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