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Free Energy Calculations

Theory and Applications in Chemistry and Biology

Part of the book series: Springer Series in Chemical Physics (CHEMICAL, volume 86)

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Table of contents (14 chapters)

  1. Front Matter

    Pages I-XVIII
  2. Introduction

    • Christophe Chipot, M. Scott Shell, Andrew Pohorille
    Pages 1-31
  3. Calculating Free Energy Differences Using Perturbation Theory

    • Christophe Chipot, Andrew Pohorille
    Pages 33-75
  4. Methods Based on Probability Distributions and Histograms

    • M. Scott Shell, Athanassios Panagiotopoulos, Andrew Pohorille
    Pages 77-118
  5. Potential Distribution Methods and Free Energy Models of Molecular Solutions

    • Lawrence R. Pratt, Dilip Asthagiri
    Pages 323-351
  6. Methods for Examining Phase Equilibria

    • M. Scott Shell, Athanassios Panagiotopoulos
    Pages 353-387
  7. Applications of Free Energy Calculations to Chemistry and Biology

    • Christophe Chipot, Alan E. Mark, Vijay S. Pande, Thomas Simonson
    Pages 463-501
  8. Summary and Outlook

    • Andrew Pohorille, Christophe Chipot
    Pages 503-513
  9. Back Matter

    Pages 515-517

About this book

Free energy constitutes the most important thermodynamic quantity to understand how chemical species recognize each other, associate or react. Examples of problems in which knowledge of the underlying free energy behaviour is required, include conformational equilibria and molecular association, partitioning between immiscible liquids, receptor-drug interaction, protein-protein and protein-DNA association, and protein stability.

This volume sets out to present a coherent and comprehensive account of the concepts that underlie different approaches devised for the determination of free energies. The reader will gain the necessary insight into the theoretical and computational foundations of the subject and will be presented with relevant applications from molecular-level modelling and simulations of chemical and biological systems. Both formally accurate and approximate methods are covered using both classical and quantum mechanical descriptions. A central theme of the book is that the wide variety of free energy calculation techniques available today can be understood as different implementations of a few basic principles.

The book is aimed at a broad readership of graduate students and researchers having a background in chemistry, physics, engineering and physical biology.

Reviews

From the reviews:

"This is a welcome book for computational chemists. … the book assumes an advanced knowledge of graduate and research-level statistical mechanics. … The book can be highly recommended to serious practitioners who carry out or plan to carry out, proper liquid-phase simulations of free energy changes or equilibrium constants by the molecular dynamics method." (Donald G. Truhlar, Theoretical Chemistry Accounts, Vol. 121, 2008)

Editors and Affiliations

  • Equipe de Dynamique des Assemblages Membranaires UMR CNRS/UHP 7565, Universite Henri Poincare, France

    Christophe Chipot

  • Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, USA

    Andrew Pohorille

Bibliographic Information

Buy it now

Buying options

eBook USD 299.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 379.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 379.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access