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  • Conference proceedings
  • © 2004

Algorithms in Bioinformatics

4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 3240)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): WABI: International Workshop on Algorithms in Bioinformatics

Conference proceedings info: WABI 2004.

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Table of contents (39 papers)

  1. Front Matter

  2. Papers

    1. Reversing Gene Erosion – Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data

      • Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret
      Pages 1-13
    2. Reconstructing Ancestral Gene Orders Using Conserved Intervals

      • Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cedric Chauve
      Pages 14-25
    3. Sorting by Reversals with Common Intervals

      • Martin Figeac, Jean-Stéphane Varré
      Pages 26-37
    4. Algorithms for Finding Maximal-Scoring Segment Sets

      • Miklós Csűrös
      Pages 62-73
    5. Gapped Local Similarity Search with Provable Guarantees

      • Manikandan Narayanan, Richard M. Karp
      Pages 74-86
    6. Monotone Scoring of Patterns with Mismatches

      • Alberto Apostolico, Cinzia Pizzi
      Pages 87-98
    7. Suboptimal Local Alignments Across Multiple Scoring Schemes

      • Morris Michael, Christoph Dieterich, Jens Stoye
      Pages 99-110
    8. Adding Hidden Nodes to Gene Networks

      • Benny Chor, Tamir Tuller
      Pages 123-134
    9. Joint Analysis of DNA Copy Numbers and Gene Expression Levels

      • Doron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini
      Pages 135-146
    10. Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation

      • Lev Soinov, Alexander Kanapin, Misha Kapushesky
      Pages 159-169
    11. Multiple Vector Seeds for Protein Alignment

      • Daniel G. Brown
      Pages 170-181
    12. Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations

      • Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson
      Pages 194-205
    13. ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences

      • Stanislav Angelov, Sanjeev Khanna, Li Li, Fernando Pereira
      Pages 206-217
    14. Local Search Heuristic for Rigid Protein Docking

      • Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunner, Johannes Rudolph
      Pages 218-229

Other Volumes

  1. Algorithms in Bioinformatics

Editors and Affiliations

  • Department of Informatics and Computational Biology Unit, HIB, University of Bergen, Bergen, Norway

    Inge Jonassen

  • Department of Biology,, Penn Center for Bioinformatics, Penn Genomics Institute, Philadelphia, USA

    Junhyong Kim

Bibliographic Information

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access