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Plant Metabolomics

  • Book
  • © 2006

Overview

Editors:
  1. Kazuki Saito

    1. Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan
      RIKEN Plant Science Center, Yokohama, Japan

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  2. Richard A. Dixon

    1. Plant Biology Division, Samuel Roberts Noble Foundation, Ardmore, USA

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    You can also search for this editor in PubMed   Google Scholar

  3. Lothar Willmitzer

    1. Max Planck Institute of Molecular Plant Physiology, Golm, Germany

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    You can also search for this editor in PubMed   Google Scholar

  • A landmark in plant metabolomics research
  • Richly illustrated with numerous figures, many of them in color
  • Includes supplementary material: sn.pub/extras

Part of the book series: Biotechnology in Agriculture and Forestry (AGRICULTURE, volume 57)

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Table of contents (23 chapters)

  1. Front Matter

    Pages I-XIX
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  2. Analytical Technology

    1. Front Matter

      Pages 1-1
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    2. Gas Chromatography Mass Spectrometry

      • J. Kopka
      Pages 3-20

    3. Current Status and Forward Looking Thoughts on LC/MS Metabolomics

      • L. W. Sumner
      Pages 21-32

    4. Plant Metabolomics Strategies Based upon Quadrupole Time of Flight Mass Spectrometry (QTOF-MS)

      • H. A. Verhoeven, C. H. Ric de Vos, R. J. Bino, R. D. Hall
      Pages 33-48

    5. Capillary HPLC

      • T. Ikegami, E. Fukusaki, N. Tanaka
      Pages 49-63

    6. Capillary HPLC Coupled to Electrospray Ionization Quadrupole Time-of-flight Mass Spectrometry

      • S. Clemens, C. Böttcher, M. Franz, E. Willscher, E. v. Roepenack-Lahaye, D. Scheel
      Pages 65-79

    7. NMR Spectroscopy in Plant Metabolomics

      • J. L. Ward, M. H. Beale
      Pages 81-91

    8. Hetero-nuclear NMR-based Metabolomics

      • J. Kikuchi, T. Hirayama
      Pages 93-101

  3. Bioinformatics

    1. Front Matter

      Pages 103-103
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    2. Bioinformatics Approaches to Integrate Metabolomics and Other Systems Biology Data

      • B. Mehrotra, P. Mendes
      Pages 105-115

    3. Chemometrics in Metabolomics — An Introduction

      • J. Trygg, J. Gullberg, A. I. Johansson, P. Jonsson, T. Moritz
      Pages 117-128

    4. Map Editor for the Atomic Reconstruction of Metabolism (ARM)

      • M. Arita, Y. Fujiwara, Y. Nakanishi
      Pages 129-139

    5. AraCyc: Overview of an Arabidopsis Metabolism Database and its Applications for Plant Research

      • S. Y. Rhee, P. Zhang, H. Foerster, C. Tissier
      Pages 141-154

    6. KaPPA-View: A Tool for Integrating Transcriptomic and Metabolomic Data on Plant Metabolic Pathway Maps

      • T. Tokimatsu, N. Sakurai, H. Suzuki, D. Shibata
      Pages 155-163

    7. KNApSAcK: A Comprehensive Species-Metabolite Relationship Database

      • Y. Shinbo, Y. Nakamura, M. Altaf-Ul-Amin, H. Asahi, K. Kurokawa, M. Arita et al.
      Pages 165-181

  4. Applications

    1. Front Matter

      Pages 183-183
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    2. Systems Biology: A Renaissance of the Top-down Approach for Plant Analysis

      • F. Carrari, N. Schauer, L. Willmitzer, A. R. Fernie
      Pages 185-198

    3. Systems-based Analysis of Plant Metabolism by Integration of Metabolomics with Transcriptomics

      • M. Y. Hirai, T. Tohge, K. Saito
      Pages 199-209

    4. Targeted Profiling of Fatty Acids and Related Metabolites

      • T. R. Larson, I. A. Graham
      Pages 211-228
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Keywords

About this book

Metabolomics – which deals with all metabolites of an organism – is a rapidly-emerging sector of post-genome research fields. It plays significant roles in a variety of fields from medicine to agriculture and holds a fundamental position in functional genomics studies and their application in plant biotechnology.

This volume comprehensively covers plant metabolomics for the first time. The chapters offer cutting-edge information on analytical technology, bioinformatics and applications. They were all written by leading researchers who have been directly involved in plant metabolomics research throughout the world. Up-to-date information and future developments are described, thereby producing a volume which is a landmark of plant metabolomics research and a beneficial guideline to graduate students and researchers in academia, industry, and technology transfer organizations in all plant science fields.

Editors and Affiliations

  • Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan

    Kazuki Saito

  • RIKEN Plant Science Center, Yokohama, Japan

    Kazuki Saito

  • Plant Biology Division, Samuel Roberts Noble Foundation, Ardmore, USA

    Richard A. Dixon

  • Max Planck Institute of Molecular Plant Physiology, Golm, Germany

    Lothar Willmitzer

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