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Computational Life Sciences

First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, Proceedings

  • Conference proceedings
  • © 2005

Overview

Editors:
  1. Michael R. Berthold

    1. Berkeley Initiative in Soft Computing (BISC), University of California at Berkeley, USA

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  2. Robert C. Glen

    1. Unilever Centre for Molecular Informatics, Department of Chemistry, Cambridge University, Cambridge, UK

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  3. Kay Diederichs

    1. Department of Biology, University of Konstanz, Konstanz, Germany

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  4. Oliver Kohlbacher

    1. Division for Simulation of Biological Systems, Center for Bioinformatics Tübingen, Eberhard Karls University Tübingen, Tübingen, Germany

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  5. Ingrid Fischer

    1. ALTANA Chair for Bioinformatics and Information Mining, University of Konstanz, Germany

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 3695)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: CompLife 2005.

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Table of contents (24 papers)

  1. Front Matter

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  2. Systems Biology

    1. Structural Protein Interactions Predict Kinase-Inhibitor Interactions in Upregulated Pancreas Tumour Genes Expression Data

      • Gihan Dawelbait, Christian Pilarsky, Yanju Zhang, Robert Grützmann, Michael Schroeder
      Pages 1-11

    2. Biochemical Pathway Analysis via Signature Mining

      • Eleftherios Panteris, Stephen Swift, Annette Payne, Xiaohui Lui
      Pages 12-23

    3. Recurrent Neuro-fuzzy Network Models for Reverse Engineering Gene Regulatory Interactions

      • Ioannis Maraziotis, Andrei Dragomir, Anastasios Bezerianos
      Pages 24-34

  3. Data Analysis and Integration

    1. Some Applications of Dummy Point Scatterers for Phasing in Macromolecular X-Ray Crystallography

      • Alexandre Urzhumtsev, Natalia Lunina, Pavel Afonine, Vladimir Y. Lunin
      Pages 35-45

    2. BioRegistry: A Structured Metadata Repository for Bioinformatic Databases

      • Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes
      Pages 46-56

    3. Robust Perron Cluster Analysis for Various Applications in Computational Life Science

      • Marcus Weber, Susanna Kube
      Pages 57-66

  4. Structural Biology

    1. Multiple Alignment of Protein Structures in Three Dimensions

      • Evgeny Krissinel, Kim Henrick
      Pages 67-78

    2. Protein Annotation by Secondary Structure Based Alignments (PASSTA)

      • Constantin Bannert, Jens Stoye
      Pages 79-90

    3. MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces

      • Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
      Pages 91-103

  5. Genomics

    1. Frequent Itemsets for Genomic Profiling

      • Jeannette M. de Graaf, Renée X. de Menezes, Judith M. Boer, Walter A. Kosters
      Pages 104-116

    2. Gene Selection Through Sensitivity Analysis of Support Vector Machines

      • Defeng Wang, Daniel S. Yeung, Eric C. C. Tsang, Lin Shi
      Pages 117-127

    3. The Breakpoint Graph in Ciliates

      • R. Brijder, H. J. Hoogeboom, G. Rozenberg
      Pages 128-139

  6. Computational Proteomics

    1. ProSpect: An R Package for Analyzing SELDI Measurements Identifying Protein Biomarkers

      • Andreas Quandt, Alexander Ploner, Chuen Seng Tan, Janne Lehtiö, Yudi Pawitan
      Pages 140-150

    2. Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples

      • Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber et al.
      Pages 151-162

    3. Detection of Protein Assemblies in Crystals

      • Evgeny Krissinel, Kim Henrick
      Pages 163-174

  7. Molecular Informatics

    1. Molecular Similarity Searching Using COSMO Screening Charges (COSMO/3PP)

      • Andreas Bender, Andreas Klamt, Karin Wichmann, Michael Thormann, Robert C. Glen
      Pages 175-185

    2. Increasing Diversity in In-silico Screening with Target Flexibility

      • B. Fischer, H. Merlitz, W. Wenzel
      Pages 186-197

    3. Multiple Semi-flexible 3D Superposition of Drug-Sized Molecules

      • Daniel Baum
      Pages 198-207

  8. Molecular Structure Determination and Simulation

    1. Efficiency Considerations in Solving Smoluchowski Equations for Rough Potentials

      • Polina Banushkina, Olaf Schenk, Markus Meuwly
      Pages 208-216
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Other volumes

  1. Computational Life Sciences

Keywords

Editors and Affiliations

  • Berkeley Initiative in Soft Computing (BISC), University of California at Berkeley, USA

    Michael R. Berthold

  • Unilever Centre for Molecular Informatics, Department of Chemistry, Cambridge University, Cambridge, UK

    Robert C. Glen

  • Department of Biology, University of Konstanz, Konstanz, Germany

    Kay Diederichs

  • Division for Simulation of Biological Systems, Center for Bioinformatics Tübingen, Eberhard Karls University Tübingen, Tübingen, Germany

    Oliver Kohlbacher

  • ALTANA Chair for Bioinformatics and Information Mining, University of Konstanz, Germany

    Ingrid Fischer

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