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Data Integration in the Life Sciences

First International Workshop, DILS 2004, Leipzig, Germany, March 25-26, 2004, proceedings

  • Conference proceedings
  • © 2004

Overview

Editors:
  1. Erhard Rahm

    1. Dept. of Computer Science, University of Leipzig,  

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 2994)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: DILS 2004.

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Table of contents (15 papers)

  1. Front Matter

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  2. Scientific and Clinical Workflows

    1. An Ontology-Driven Framework for Data Transformation in Scientific Workflows

      • Shawn Bowers, Bertram Ludäscher
      Pages 1-16

    2. PROVA: Rule-Based Java-Scripting for a Bioinformatics Semantic Web

      • Alexander Kozlenkov, Michael Schroeder
      Pages 17-30

    3. Process Based Data Logistics: a Solution for Clinical Integration Problems

      • Stefan Jablonski, Rainer Lay, Christian Meiler, Sascha Müller
      Pages 31-46

  3. Ontologies and Taxonomies

    1. Domain-Specific Concepts and Ontological Reduction within a Data Dictionary Framework

      • Barbara Heller, Heinrich Herre, Kristin Lippoldt
      Pages 47-62

    2. A Universal Character Model and Ontology of Defined Terms for Taxonomic Description

      • Trevor Paterson, Jessie B. Kennedy, Martin R. Pullan, Alan Cannon, Kate Armstrong, Mark F. Watson et al.
      Pages 63-78

    3. On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology

      • Barry Smith, Jacob Köhler, Anand Kumar
      Pages 79-94

  4. Indexing and Clustering

    1. Index-Driven XML Data Integration to Support Functional Genomics

      • Ela Hunt, Evangelos Pafilis, Inga Tulloch, John Wilson
      Pages 95-109

    2. Heterogeneous Data Integration with the Consensus Clustering Formalism

      • Vladimir Filkov, Steven Skiena
      Pages 110-123

  5. Integration Tools and Systems

    1. LinkSuiteTM: Formally Robust Ontology-Based Data and Information Integration

      • Werner Ceusters, Barry Smith, James Matthew Fielding
      Pages 124-139

    2. BioDataServer: an Applied Molecular Biological Data Integration Service

      • Sören Balko, Matthias Lange, Roland Schnee, Uwe Scholz
      Pages 140-155

    3. Columba: Multidimensional Data Integration of Protein Annotations

      • Kristian Rother, Heiko Müller, Silke Trissl, Ina Koch, Thomas Steinke, Robert Preissner et al.
      Pages 156-171

  6. Integration Techniques

    1. On the Integration of a Large Number of Life Science Web Databases

      • Zina Ben Miled, Nianhua Li, Yang Liu, Yue He, Eric Lynch, Omran Bukhres
      Pages 172-186

    2. Efficient Techniques to Explore and Rank Paths in Life Science Data Sources

      • Zoé Lacroix, Louiqa Raschid, Maria-Esther Vidal
      Pages 187-202

    3. Links and Paths through Life Sciences Data Sources

      • Zoé Lacroix, Hyma Murthy, Felix Naumann, Louiqa Raschid
      Pages 203-211

    4. Pathway and Protein Interaction Data: from XML to FDM Database

      • Graham J. L. Kemp, Selpi Selpi
      Pages 212-219

  7. Back Matter

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Editors and Affiliations

  • Dept. of Computer Science, University of Leipzig,  

    Erhard Rahm

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