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Bioinformatics Research and Applications

14th International Symposium, ISBRA 2018, Beijing, China, June 8-11, 2018, Proceedings

  • Conference proceedings
  • © 2018

Overview

Editors:
  1. Fa Zhang

    1. Chinese Academy of Sciences, Beijing, China

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  2. Zhipeng Cai

    1. Georgia State University, Atlanta, USA

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  3. Pavel Skums

    1. Georgia State University, Atlanta, USA

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  4. Shihua Zhang

    1. Chinese Academy of Sciences, Beijing, China

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 10847)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: ISBRA 2018.

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Table of contents (34 papers)

  1. Front Matter

    Pages I-XX
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  2. Network Analysis and Modelling

    1. Front Matter

      Pages 1-1
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    2. Prediction of Drug Response with a Topology Based Dual-Layer Network Model

      • Suyun Huang, Xing-Ming Zhao
      Pages 3-12

    3. GRTR: Drug-Disease Association Prediction Based on Graph Regularized Transductive Regression on Heterogeneous Network

      • Qiao Zhu, Jiawei Luo, Pingjian Ding, Qiu Xiao
      Pages 13-25

    4. An Improved Particle Swarm Optimization with Dynamic Scale-Free Network for Detecting Multi-omics Features

      • Huiyu Li, Sheng-Jun Li, Junliang Shang, Jin-Xing Liu, Chun-Hou Zheng
      Pages 26-37

    5. PBMarsNet: A Multivariate Adaptive Regression Splines Based Method to Reconstruct Gene Regulatory Networks

      • Siyu Zhao, Ruiqing Zheng, Xiang Chen, Yaohang Li, Fang-Xiang Wu, Min Li
      Pages 38-48

  3. Genomic Data Analysis

    1. Front Matter

      Pages 49-49
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    2. Bounds on Identification of Genome Evolution Pacemakers

      • Sagi Snir
      Pages 51-62

    3. REXTAL: Regional Extension of Assemblies Using Linked-Reads

      • Tunazzina Islam, Desh Ranjan, Eleanor Young, Ming Xiao, Mohammad Zubair, Harold Riethman
      Pages 63-78

    4. A Scalable Reference-Free Metagenomic Binning Pipeline

      • Terry Ma, Xin Xing
      Pages 79-83

  5. Structure and Interaction

    1. Front Matter

      Pages 137-137
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    2. Sprites2: Detection of Deletions Based on an Accurate Alignment Strategy

      • Zhen Zhang, Jianxin Wang, Junwei Luo, Juan Shang, Min Li, Fang-Xiang Wu et al.
      Pages 139-150

    3. KSIBW: Predicting Kinase-Substrate Interactions Based on Bi-random Walk

      • Canshang Deng, Qingfeng Chen, Zhixian Liu, Ruiqing Zheng, Jin Liu, Jianxin Wang et al.
      Pages 151-162

    4. XPredRBR: Accurate and Fast Prediction of RNA-Binding Residues in Proteins Using eXtreme Gradient Boosting

      • Lei Deng, Zuojin Dong, Hui Liu
      Pages 163-173

    5. A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations

      • Alexander Churkin, Danny Barash
      Pages 174-178
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Other volumes

  1. Bioinformatics Research and Applications

Keywords

About this book

This book constitutes the proceedings of the 14th International Conference on Bioinformatics Research and Applications, ISBRA 2018, held in Beijing, China, in June 2018.

The 24 full and 10 short papers presented in this volume were carefully reviewed and selected from a total of 138 submissions. They were organized in topical sections named: network analysis and modelling; genomic data analysis; cancer data analysis; structure and interaction; HPC and CryoEM; machine and deep learning; data analysis and methodology; analysis and visualization tools; and RNA-Seq data analysis.

Editors and Affiliations

  • Chinese Academy of Sciences, Beijing, China

    Fa Zhang, Shihua Zhang

  • Georgia State University, Atlanta, USA

    Zhipeng Cai, Pavel Skums

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