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Research in Computational Molecular Biology

22nd Annual International Conference, RECOMB 2018, Paris, France, April 21-24, 2018, Proceedings

  • Conference proceedings
  • © 2018

Overview

Editors:
  1. Benjamin J. Raphael

    1. Computer Science Department, Princeton University, Princeton, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 10812)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RECOMB 2018.

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Table of contents (15 papers)

  1. Front Matter

    Pages I-XIV
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  2. Long Reads Enable Accurate Estimates of Complexity of Metagenomes

    • Anton Bankevich, Pavel Pevzner
    Pages 1-20

  3. Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data

    • Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz
    Pages 21-36

  4. GTED: Graph Traversal Edit Distance

    • Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, S. Cenk Sahinalp, Hamidreza Chitsaz
    Pages 37-53

  5. Statistical Inference of Peroxisome Dynamics

    • Cyril Galitzine, Pierre M. Jean Beltran, Ileana M. Cristea, Olga Vitek
    Pages 54-74

  6. Loss-Function Learning for Digital Tissue Deconvolution

    • Franziska Görtler, Stefan Solbrig, Tilo Wettig, Peter J. Oefner, Rainer Spang, Michael Altenbuchinger
    Pages 75-89

  7. Inference of Population Structure from Ancient DNA

    • Tyler A. Joseph, Itsik Pe’er
    Pages 90-104

  8. Using Minimum Path Cover to Boost Dynamic Programming on DAGs: Co-linear Chaining Extended

    • Anna Kuosmanen, Topi Paavilainen, Travis Gagie, Rayan Chikhi, Alexandru Tomescu, Veli Mäkinen
    Pages 105-121

  9. Modeling Dependence in Evolutionary Inference for Proteins

    • Gary Larson, Jeffrey L. Thorne, Scott Schmidler
    Pages 122-137

  10. Constrained De Novo Sequencing of neo-Epitope Peptides Using Tandem Mass Spectrometry

    • Sujun Li, Alex DeCourcy, Haixu Tang
    Pages 138-153

  11. Reverse de Bruijn: Utilizing Reverse Peptide Synthesis to Cover All Amino Acid k-mers

    • Yaron Orenstein
    Pages 154-166

  12. Circular Networks from Distorted Metrics

    • Sebastien Roch, Kun-Chieh Wang
    Pages 167-176

  13. A Nested 2-Level Cross-Validation Ensemble Learning Pipeline Suggests a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in Saccharomyces Cerevisae

    • Antoine Soulé, Jean-Marc Steyaert, Jérôme Waldispühl
    Pages 177-193

  14. Context-Specific Nested Effects Models

    • Yuriy Sverchkov, Yi-Hsuan Ho, Audrey Gasch, Mark Craven
    Pages 194-210

  15. Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis

    • Sharma V. Thankachan, Chaitanya Aluru, Sriram P. Chockalingam, Srinivas Aluru
    Pages 211-224

  16. Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes

    • Zhemin Zhou, Nina Luhmann, Nabil-Fareed Alikhan, Christopher Quince, Mark Achtman
    Pages 225-240

  17. Back Matter

    Pages 241-298
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Other volumes

  1. Research in Computational Molecular Biology

Keywords

About this book

This book constitutes the proceedings of the 22nd Annual Conference on Research in Computational Molecular Biology, RECOMB 2018, held in Paris, France, in April 2018.

The 16 extended and 22 short abstracts presented were carefully reviewed and selected from 193 submissions. The short abstracts are included in the back matter of the volume. They report on original research in all areas of computational molecular biology and bioinformatics.


Editors and Affiliations

  • Computer Science Department, Princeton University, Princeton, USA

    Benjamin J. Raphael

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