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Simulation and Synthesis in Medical Imaging

First International Workshop, SASHIMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 21, 2016, Proceedings

  • Conference proceedings
  • © 2016

Overview

Editors:
  1. Sotirios A. Tsaftaris

    1. University of Edinburgh , Edinburgh, United Kingdom

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  2. Ali Gooya

    1. University of Sheffield , Sheffield, United Kingdom

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  3. Alejandro F. Frangi

    1. University of Sheffield , Sheffield, United Kingdom

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  4. Jerry L. Prince

    1. The Johns Hopkins University , Baltimore, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 9968)

Part of the book sub series: Image Processing, Computer Vision, Pattern Recognition, and Graphics (LNIP)

Included in the following conference series:

Conference proceedings info: SASHIMI 2016.

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Table of contents (17 papers)

  1. Front Matter

    Pages I-X
    Download chapter PDF

  2. Simulation and Its Applications in Computational Medical Imaging

    1. Front Matter

      Pages 1-1
      Download chapter PDF

    2. Software Framework for Realistic MRI Simulations Using the Polyhedral Fourier Transform

      • Shuo Han, Daniel A. Herzka
      Pages 3-12

    3. Covering Population Variability: Morphing of Computation Anatomical Models

      • Bryn Lloyd, Emilio Cherubini, Silvia Farcito, Esra Neufeld, Christian Baumgartner, Niels Kuster
      Pages 13-22

    4. Image-Based PSF Estimation for Ultrasound Training Simulation

      • Oliver Mattausch, Orcun Goksel
      Pages 23-33

    5. Microstructure Imaging Sequence Simulation Toolbox

      • Andrada Ianuş, Daniel C. Alexander, Ivana Drobnjak
      Pages 34-44

    6. From Image-Based Modeling to the Modeling of Imaging with the Virtual Population

      • Esra Neufeld, Bryn Lloyd, Niels Kuster
      Pages 45-54

    7. Numerical Simulation of Ultrasonic Backscattering During Fracture Healing Using Numerical Models Based on Scanning Acoustic Microscopy Images

      • Vassiliki T. Potsika, Konstantinos N. Grivas, Theodoros Gortsas, Vasilios C. Protopappas, Demosthenes Polyzos, Dimitrios I. Fotiadis
      Pages 55-64

    8. GBM Modeling with Proliferation and Migration Phenotypes: A Proposal of Initialization for Real Cases

      • Juan Ortiz-Pla, Elies Fuster-Garcia, Javier Juan-Albarracin, Juan Miguel Garcia-Gomez
      Pages 65-74

    9. PURE: Panoramic Ultrasound Reconstruction by Seamless Stitching of Volumes

      • Barbara Flach, Maxim Makhinya, Orcun Goksel
      Pages 75-84

  3. Synthesis and Its Applications in Computational Medical Imaging

    1. Front Matter

      Pages 85-85
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    2. Pseudo-healthy Image Synthesis for White Matter Lesion Segmentation

      • Christopher Bowles, Chen Qin, Christian Ledig, Ricardo Guerrero, Roger Gunn, Alexander Hammers et al.
      Pages 87-96

    3. Registration of Pathological Images

      • Xiao Yang, Xu Han, Eunbyung Park, Stephen Aylward, Roland Kwitt, Marc Niethammer
      Pages 97-107

    4. Generation of Realistic 4D Synthetic CSPAMM Tagged MR Sequences for Benchmarking Cardiac Motion Tracking Algorithms

      • Yitian Zhou, Mathieu De Craene, Oudom Somphone, Maxime Sermesant, Olivier Bernard
      Pages 108-117

    5. Geometry Regularized Joint Dictionary Learning for Cross-Modality Image Synthesis in Magnetic Resonance Imaging

      • Yawen Huang, Leandro Beltrachini, Ling Shao, Alejandro F. Frangi
      Pages 118-126

    6. Whole Image Synthesis Using a Deep Encoder-Decoder Network

      • Vasileios Sevetlidis, Mario Valerio Giuffrida, Sotirios A. Tsaftaris
      Pages 127-137

    7. Automated Quality Assessment of Cardiac MR Images Using Convolutional Neural Networks

      • Le Zhang, Ali Gooya, Bo Dong, Rui Hua, Steffen E. Petersen, Pau Medrano-Gracia et al.
      Pages 138-145

    8. Patch Based Synthesis of Whole Head MR Images: Application To EPI Distortion Correction

      • Snehashis Roy, Yi-Yu Chou, Amod Jog, John A. Butman, Dzung L. Pham
      Pages 146-156

    9. MRI-TRUS Image Synthesis with Application to Image-Guided Prostate Intervention

      • John A. Onofrey, Ilkay Oksuz, Saradwata Sarkar, Rajesh Venkataraman, Lawrence H. Staib, Xenophon Papademetris
      Pages 157-166

    10. Automatic Generation of Synthetic Retinal Fundus Images: Vascular Network

      • Elisa Menti, Lorenza Bonaldi, Lucia Ballerini, Alfredo Ruggeri, Emanuele Trucco
      Pages 167-176
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  1. Simulation and Synthesis in Medical Imaging

Keywords

About this book

This book constitutes the refereed proceedings of the First International Workshop on Simulation and Synthesis in Medical Imaging, held in conjunction with MICCAI 2016, in Athens, Greece, in October 2016.

The 17 revised full papers presented together in this book were carefully reviewed and selected from 21 submissions.

The contributions span the following broad categories: fundamental methods for image-based biophysical modeling and image synthesis; biophysical and data-driven models of disease progression or organ development; biophysical and data-driven models of organ motion and deformation; biophysical and data-driven models of image formation and acquisition; segmentation/registration across or within modalities to aid the learning of model parameters; cross modality (PET/MR, PET/CT, CT/MR, etc.) image synthesis; simulation and synthesis from large-scale image databases; automated techniques for quality assessment of simulations and synthetic images; as well asseveral applications of image synthesis and simulation in medical imaging such as image registration and segmentation; image denoising and information fusion; image reconstruction from sparse data or sparse views; and real-time simulation of biophysical properties. The papers were divided into two general topics named “simulation based approaches for medical imaging” and “synthesis and its applications in computational medical imaging”.

Editors and Affiliations

  • University of Edinburgh , Edinburgh, United Kingdom

    Sotirios A. Tsaftaris

  • University of Sheffield , Sheffield, United Kingdom

    Ali Gooya, Alejandro F. Frangi

  • The Johns Hopkins University , Baltimore, USA

    Jerry L. Prince

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