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Advances in Bioinformatics and Computational Biology

8th Brazilian Symposium on Bioinformatics, BSB 2013, Recife, Brazil, November 3-7, 2013, Proceedings

  • Conference proceedings
  • © 2013

Overview

Editors:
  1. João C. Setubal

    1. Institute of Chemistry, University of São Paulo, São Paulo, Brazil

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  2. Nalvo F. Almeida

    1. School of Computing, Facom-UFMS, Federal University of Mato Grosso do Sul, Brazil

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    You can also search for this editor in PubMed   Google Scholar

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 8213)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: BSB 2013.

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Table of contents (19 papers)

  1. Front Matter

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  2. The Trouble with Long-Range Base Pairs in RNA Folding

    • Fabian Amman, Stephan H. Bernhart, Gero Doose, Ivo L. Hofacker, Jing Qin, Peter F. Stadler et al.
    Pages 1-11

  3. Roles of RORα on Transcriptional Expressions in the Mammalian Circadian Regulatory System

    • Hiroshi Matsuno, Makoto Akashi
    Pages 12-23

  4. HybHap: A Fast and Accurate Hybrid Approach for Haplotype Inference on Large Datasets

    • Rogério S. Rosa, Katia S. Guimarães
    Pages 24-35

  5. Restricted DCJ-Indel Model Revisited

    • Marília D. V. Braga, Jens Stoye
    Pages 36-46

  6. MSA-GPU: Exact Multiple Sequence Alignment Using GPU

    • Daniel Sundfeld, Alba C. M. A. de Melo
    Pages 47-58

  7. MultiSETTER - Multiple RNA Structure Similarity Algorithm

    • David Hoksza, Peter Szépe, Daniel Svozil
    Pages 59-70

  8. Assessing the Accuracy of the SIRAH Force Field to Model DNA at Coarse Grain Level

    • Pablo D. Dans, Leonardo Darré, Matías R. Machado, Ari Zeida, Astrid F. Brandner, Sergio Pantano
    Pages 71-81

  9. How to Multiply Dynamic Programming Algorithms

    • Christian Höner zu Siederdissen, Ivo L. Hofacker, Peter F. Stadler
    Pages 82-93

  10. Influence of Scaffold Stability and Electrostatics on Top7-Based Engineered Helical HIV-1 Epitopes

    • Isabelle F. T. Viana, Rafael Dhalia, Marco A. Krieger, Ernesto T. A. Marques, Roberto D. Lins
    Pages 94-103

  11. Random Forest and Gene Networks for Association of SNPs to Alzheimer’s Disease

    • Gilderlanio S. Araújo, Manuela R. B. Souza, João Ricardo M. Oliveira, Ivan G. Costa
    Pages 104-115

  12. Multilayer Cluster Heat Map Visualizing Biological Tensor Data

    • Atsushi Niida, Georg Tremmel, Seiya Imoto, Satoru Miyano
    Pages 116-125

  13. On the 1.375-Approximation Algorithm for Sorting by Transpositions in O(n logn) Time

    • Luís Felipe I. Cunha, Luis Antonio B. Kowada, Rodrigo de A. Hausen, Celina M. H. de Figueiredo
    Pages 126-135

  14. ncRNA-Agents: A Multiagent System for Non-coding RNA Annotation

    • Wosley Arruda, Célia G. Ralha, Tainá Raiol, Marcelo M. Brígido, Maria Emília M. T. Walter, Peter F. Stadler
    Pages 136-147

  15. Inference of Genetic Regulatory Networks Using an Estimation of Distribution Algorithm

    • Thyago Salvá, Leonardo R. Emmendorfer, Adriano V. Werhli
    Pages 148-159

  16. A Network-Based Meta-analysis Strategy for the Selection of Potential Gene Modules in Type 2 Diabetes

    • Ronnie Alves, Marcus Mendes, Diego Bonnato
    Pages 160-169

  17. RAIDER: Rapid Ab Initio Detection of Elementary Repeats

    • Nathaniel Figueroa, Xiaolin Liu, Jiajun Wang, John Karro
    Pages 170-180

  18. A Probabilistic Model Checking Analysis of the Potassium Reactions with the Palytoxin and Na + /K + -ATPase Complex

    • Fernando Braz, João Amaral, Bruno Ferreira, Jader Cruz, Alessandra Faria-Campos, Sérgio Campos
    Pages 181-193

  19. False Discovery Rate for Homology Searches

    • Hyrum D. Carroll, Alex C. Williams, Anthony G. Davis, John L. Spouge
    Pages 194-201

  20. A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome

    • Guilherme Menegói, Tainá Raiol, João Victor de Araújo Oliveira, Edans Flávius de Oliveira Sandes, Alba Cristina Magalhães Alves de Melo, Andréa Queiroz Maranhão et al.
    Pages 202-213
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Other volumes

  1. Advances in Bioinformatics and Computational Biology

Keywords

About this book

This book constitutes the refereed proceedings of the 8th Brazilian Symposium on Bioinformatics, BSB 2013, held in Recife, Brazil, in November 2013. The 18 regular papers presented were carefully reviewed and selected for inclusion in this book. The papers cover all aspects of bioinformatics and computational biology.

Editors and Affiliations

  • Institute of Chemistry, University of São Paulo, São Paulo, Brazil

    João C. Setubal

  • School of Computing, Facom-UFMS, Federal University of Mato Grosso do Sul, Brazil

    Nalvo F. Almeida

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