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DNA Computing and Molecular Programming

19th International Conference, DNA 2013, Tempe, AZ, USA, September 22-27, 2013, Proceedings

  • Conference proceedings
  • © 2013

Overview

Editors:
  1. David Soloveichik

    1. Center for Systems and Synthetic Biology, University of California, USA

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  2. Bernard Yurke

    1. Materials Science and Engineering Department, Boise State University, Boise, USA

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  • Fast-track conference proceedings of DNA 2013

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 8141)

Part of the book sub series: Theoretical Computer Science and General Issues (LNTCS)

Included in the following conference series:

Conference proceedings info: DNA 2013.

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Table of contents (15 papers)

  1. Front Matter

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  2. Extending DNA-Sticker Arithmetic to Arbitrary Size Using Staples

    • Mark G. Arnold
    Pages 1-15

  3. Parallel Computation Using Active Self-assembly

    • Moya Chen, Doris Xin, Damien Woods
    Pages 16-30

  4. DNA Walker Circuits: Computational Potential, Design, and Verification

    • Frits Dannenberg, Marta Kwiatkowska, Chris Thachuk, Andrew J. Turberfield
    Pages 31-45

  5. Leaderless Deterministic Chemical Reaction Networks

    • David Doty, Monir Hajiaghayi
    Pages 46-60

  6. DNA Sticky End Design and Assignment for Robust Algorithmic Self-assembly

    • Constantine G. Evans, Erik Winfree
    Pages 61-75

  7. DNA Reservoir Computing: A Novel Molecular Computing Approach

    • Alireza Goudarzi, Matthew R. Lakin, Darko Stefanovic
    Pages 76-89

  8. Signal Transmission across Tile Assemblies: 3D Static Tiles Simulate Active Self-assembly by 2D Signal-Passing Tiles

    • Jacob Hendricks, Jennifer E. Padilla, Matthew J. Patitz, Trent A. Rogers
    Pages 90-104

  9. 3-Color Bounded Patterned Self-assembly

    • Lila Kari, Steffen Kopecki, Shinnosuke Seki
    Pages 105-117

  10. Exponential Replication of Patterns in the Signal Tile Assembly Model

    • Alexandra Keenan, Robert Schweller, Xingsi Zhong
    Pages 118-132

  11. Modular Verification of DNA Strand Displacement Networks via Serializability Analysis

    • Matthew R. Lakin, Andrew Phillips, Darko Stefanovic
    Pages 133-146

  12. Iterative Self-assembly with Dynamic Strength Transformation and Temperature Control

    • Dandan Mo, Darko Stefanovic
    Pages 147-159

  13. Probabilistic Reasoning with an Enzyme-Driven DNA Device

    • Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
    Pages 160-173

  14. Staged Self-assembly and Polyomino Context-Free Grammars

    • Andrew Winslow
    Pages 174-188

  15. Functional Analysis of Large-Scale DNA Strand Displacement Circuits

    • Boyan Yordanov, Christoph M. Wintersteiger, Youssef Hamadi, Andrew Phillips, Hillel Kugler
    Pages 189-203

  16. Erratum to: DNA Computing and Molecular Programming

    • David Soloveichik, Bernard Yurke
    Pages E1-E1

  17. Back Matter

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Other volumes

  1. DNA Computing and Molecular Programming

Keywords

About this book

This book constitutes the refereed proceedings of the 19th International Conference on DNA Computing and Molecular Programming, DNA 19, held in Tempe, AZ, USA, in September 2013. The 14 full papers presented were carefully selected from 29 submissions. The papers are organized in many disciplines (including mathematics, computer science, physics, chemistry, material science and biology) to address the analysis, design, and synthesis of information-based molecular systems.

Editors and Affiliations

  • Center for Systems and Synthetic Biology, University of California, USA

    David Soloveichik

  • Materials Science and Engineering Department, Boise State University, Boise, USA

    Bernard Yurke

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