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Advances in Computational Biology

Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics (CCBCOL)

  • Conference proceedings
  • © 2014

Overview

Editors:
  1. Luis F. Castillo

    1. University of Caldas, Manizales, Colombia

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  2. Marco Cristancho

    1. Cenicafé - Centro Nacional de Investigaciones del Café en Colombia, Chinchiná, Colombia

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  3. Gustavo Isaza

    1. University of Caldas, Manizales, Colombia

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  4. Andrés Pinzón

    1. BIOS - Centro Bioinformática y Biologia Computacional de Colombia, Manizales, Colombia

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  5. Juan Manuel Corchado Rodríguez

    1. Department of Computer Science School of Science, University of Salamanca, Salamanca, Spain

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  • Latest research on Computational Biology
  • Results of the second Colombian Computational Biology Congress (CCBCOL) held in Manizales, Colombia from 25th till 27th of September 2013
  • Written by experts in the field

Part of the book series: Advances in Intelligent Systems and Computing (AISC, volume 232)

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Table of contents (54 papers)

  1. Front Matter

    Pages 1-15
    Download chapter PDF

  2. Predictive Modeling of Signaling Transduction Mediated by Tyrosine-Kinase Receptors

    • Ivan Mura
    Pages 1-6

  3. Bioinformatic Analysis of Two Proteins with Suspected Linkage to Pulmonary Atresia with Intact Ventricular Septum

    • Oscar Andrés Alzate Mejía, Antonio Jesús Pérez Pulido
    Pages 7-12

  4. Construction and Comparison of Gene Co-expression Networks Based on Immunity Microarray Data from Arabidopsis, Rice, Soybean, Tomato and Cassava

    • Luis Guillermo Leal, Camilo López, Liliana López-Kleine
    Pages 13-19

  5. in silico Binding Free Energy Characterization of Cowpea Chlorotic Mottle Virus Coat Protein Homodimer Variants

    • Armando Díaz-Valle, Gabriela Chávez-Calvillo, Mauricio Carrillo-Tripp
    Pages 21-28

  6. Analysis of Binding Residues between PDGF-BB and Epidermal Growth Factor Receptor: A Computational Docking Study

    • Ricardo Cabezas, Daniel Torrente, Marco Fidel Avila, Jannet González, George Emilio Barreto
    Pages 29-39

  7. Software as a Service for Supporting Biodiversity Conservation Decision Making

    • Maria Cecilia Londoño-Murcia, Camilo Moreno, Carolina Bello, David Méndez, Mario Villamizar, Harold Castro
    Pages 41-46

  8. Structural and Functional Prediction of the Hypothetical Protein Pa2481 in Pseudomonas Aeruginosa Pao1

    • David Alberto Díaz, George Emilio Barreto, Janneth González Santos
    Pages 47-55

  9. Exploration of the Effect of Input Data on the Modeling of Cellular Objective in Flux Balance Analysis (FBA)

    • Carlos Eduardo García Sánchez, Rodrigo Gonzalo Torres Sáez
    Pages 57-62

  10. Prediction of Potential Kinase Inhibitors in Leishmania spp. through a Machine Learning and Molecular Docking Approach

    • Rodrigo Ochoa, Mark Davies, Andrés Flórez, Jairo Espinosa, Carlos Muskus
    Pages 63-70

  11. Functional Protein Prediction Using HMM Based Feature Representation and Relevance Analysis

    • Diego Fabian Collazos-Huertas, Andres Felipe Giraldo-Forero, David Cárdenas-Peña, Andres Marino Álvarez-Meza, Germán Castellanos-Domínguez
    Pages 71-76

  12. High Throughput Location Proteomics in Confocal Images from the Human Protein Atlas Using a Bag-of-Features Representation

    • Raúl Ramos-Pollán, John Arévalo, Ángel Cruz-Roa, Fabio González
    Pages 77-82

  13. Measuring Complexity in an Aquatic Ecosystem

    • Nelson Fernández, Carlos Gershenson
    Pages 83-89

  14. Possible Antibiofilm Effect of Peptides Derived from IcaR Repressor of Staphylococcus epidermidis Responsible for Hospital-Acquired Sepsis

    • Liliana Muñoz, Luz Mary Salazar, Stefany Botero, Jeannette Navarrete, Gladys Pinilla
    Pages 91-95

  15. “Head to Tail” Tool Analysis through ClustalW Alignment Algorithms and Construction of Distance Method Neighbor-Joining Trees Based on Genus Fusarium Genomic Distances

    • Juan David Henao, S. Melissa Rincón, D. Juan Jose Filgueira
    Pages 97-102

  16. False Positive Reduction in Automatic Segmentation System

    • Jheyson Vargas, Jairo Andres Velasco, Gloria Ines Alvarez, Diego Luis Linares, Enrique Bravo
    Pages 103-108

  17. Photosynthesis Thermodynamic Efficiency Facing Climate Change

    • Víctor Alonso López-Agudelo, Julián Cerón-Figueroa, Daniel Barragán
    Pages 109-114

  18. Thermogenesis Driven by ATP Hydrolysis in a Model with Cubic Autocatalysis

    • Julián Cerón-Figueroa, Víctor Alonso López-Agudelo, Daniel Barragán
    Pages 115-120

  19. Towards a Linked Open Data Model for Coffee Functional Relationships

    • Luis Bertel-Paternina, Luis F. Castillo, Gustavo Isaza, Alvaro Gaitán-Bustamente
    Pages 121-126

  20. Stability Analysis of Antimicrobial Peptides in Solvation Conditions by Molecular Dynamics

    • Daniel Osorio, Paola Rondón-Villarreal, Rodrigo Torres
    Pages 127-131
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Keywords

About this book

This volume compiles accepted contributions for the 2nd Edition of the Colombian Computational Biology and Bioinformatics Congress CCBCOL, after a rigorous review process in which 54 papers were accepted for publication from 119 submitted contributions. Bioinformatics and Computational Biology are areas of knowledge that have emerged due to advances that have taken place in the Biological Sciences and its integration with Information Sciences. The expansion of projects involving the study of genomes has led the way in the production of vast amounts of sequence data which needs to be organized, analyzed and stored to understand phenomena associated with living organisms related to their evolution, behavior in different ecosystems, and the development of applications that can be derived from this analysis.

 

Editors and Affiliations

  • University of Caldas, Manizales, Colombia

    Luis F. Castillo, Gustavo Isaza

  • Cenicafé - Centro Nacional de Investigaciones del Café en Colombia, Chinchiná, Colombia

    Marco Cristancho

  • BIOS - Centro Bioinformática y Biologia Computacional de Colombia, Manizales, Colombia

    Andrés Pinzón

  • Department of Computer Science School of Science, University of Salamanca, Salamanca, Spain

    Juan Manuel Corchado Rodríguez

Bibliographic Information

  • Book Title: Advances in Computational Biology

  • Book Subtitle: Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics (CCBCOL)

  • Editors: Luis F. Castillo, Marco Cristancho, Gustavo Isaza, Andrés Pinzón, Juan Manuel Corchado Rodríguez

  • Series Title: Advances in Intelligent Systems and Computing

  • DOI: https://doi.org/10.1007/978-3-319-01568-2

  • Publisher: Springer Cham

  • eBook Packages: Engineering, Engineering (R0)

  • Copyright Information: Springer International Publishing Switzerland 2014

  • Softcover ISBN: 978-3-319-01567-5Published: 19 August 2013

  • eBook ISBN: 978-3-319-01568-2Published: 04 August 2013

  • Series ISSN: 2194-5357

  • Series E-ISSN: 2194-5365

  • Edition Number: 1

  • Number of Pages: XVIII, 397

  • Number of Illustrations: 105 b/w illustrations

  • Topics: Computational Intelligence, Artificial Intelligence, Computational Biology/Bioinformatics

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