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Bioinformatics Research and Applications

15th International Symposium, ISBRA 2019, Barcelona, Spain, June 3–6, 2019, Proceedings

  • Conference proceedings
  • © 2019

Overview

Editors:
  1. Zhipeng Cai

    1. Georgia State University, Atlanta, USA

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    You can also search for this editor in PubMed   Google Scholar

  2. Pavel Skums

    1. Georgia State University, Atlanta, USA

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    You can also search for this editor in PubMed   Google Scholar

  3. Min Li

    1. Central South University, Changsha, China

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 11490)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: ISBRA 2019.

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Table of contents (22 papers)

  1. Front Matter

    Pages i-xiii
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  2. Genome Analysis

    1. Front Matter

      Pages 1-1
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    2. Computing a Consensus Phylogeny via Leaf Removal

      • Zhi-Zhong Chen, Shohei Ueta, Jingyu Li, Lusheng Wang
      Pages 3-15

    3. The Review of Bioinformatics Tool for 3D Plant Genomics Research

      • Xiangyu Yang, Zhenghao Li, Jingtian Zhao, Tao Ma, Pengchao Li, Le Zhang
      Pages 16-27

    4. Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes

      • Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
      Pages 28-39

    5. Unifying Gene Duplication, Loss, and Coalescence on Phylogenetic Networks

      • Peng Du, Huw A. Ogilvie, Luay Nakhleh
      Pages 40-51

    6. The Cluster Affinity Distance for Phylogenies

      • Jucheol Moon, Oliver Eulenstein
      Pages 52-64

    7. Modeling SNP-Trait Associations and Realizing Privacy-Utility Tradeoff in Genomic Data Publishing

      • Zaobo He, Jianqiang Li
      Pages 65-72

    8. Simultaneous Multi-Domain-Multi-Gene Reconciliation Under the Domain-Gene-Species Reconciliation Model

      • Lei Li, Mukul S. Bansal
      Pages 73-86

  3. Systems Biology

    1. Front Matter

      Pages 87-87
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    2. IDNDDI: An Integrated Drug Similarity Network Method for Predicting Drug-Drug Interactions

      • Cheng Yan, Guihua Duan, Yayan Zhang, Fang-Xiang Wu, Yi Pan, Jianxin Wang
      Pages 89-99

    3. Model Revision of Boolean Regulatory Networks at Stable State

      • Filipe Gouveia, Inês Lynce, Pedro T. Monteiro
      Pages 100-112

    4. Gene- and Pathway-Based Deep Neural Network for Multi-omics Data Integration to Predict Cancer Survival Outcomes

      • Jie Hao, Mohammad Masum, Jung Hun Oh, Mingon Kang
      Pages 113-124

  4. Computational Proteomics

    1. Front Matter

      Pages 125-125
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    2. Identifying Human Essential Genes by Network Embedding Protein-Protein Interaction Network

      • Wei Dai, Qi Chang, Wei Peng, Jiancheng Zhong, Yongjiang Li
      Pages 127-137

    3. Automated Hub-Protein Detection via a New Fused Similarity Measure-Based Multi-objective Clustering Framework

      • Sudipta Acharya, Laizhong Cui, Yi Pan
      Pages 138-145

    4. Improving Identification of Essential Proteins by a Novel Ensemble Method

      • Wei Dai, Xia Li, Wei Peng, Jurong Song, Jiancheng Zhong, Jianxin Wang
      Pages 146-155

  5. Machine and Deep Learning

    1. Front Matter

      Pages 157-157
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    2. Deep Learning and Random Forest-Based Augmentation of sRNA Expression Profiles

      • Jelena Fiosina, Maksims Fiosins, Stefan Bonn
      Pages 159-170

    3. Detecting Illicit Drug Ads in Google+ Using Machine Learning

      • Fengpan Zhao, Pavel Skums, Alex Zelikovsky, Eric L. Sevigny, Monica Haavisto Swahn, Sheryl M. Strasser et al.
      Pages 171-179
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  1. Bioinformatics Research and Applications

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About this book

This book constitutes the proceedings of the 15th International Symposium on Bioinformatics Research and Applications, ISBRA 2019, held in Barcelona, Spain, in June 2019.

The 22 full papers presented in this book were carefully reviewed and selected from 95 submissions. They were organized in topical sections named: genome analysis; systems biology; computational proteomics; machine and deep learning; and data analysis and methodology.

Editors and Affiliations

  • Georgia State University, Atlanta, USA

    Zhipeng Cai, Pavel Skums

  • Central South University, Changsha, China

    Min Li

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