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Data Integration in the Life Sciences

13th International Conference, DILS 2018, Hannover, Germany, November 20-21, 2018, Proceedings

  • Conference proceedings
  • © 2019

Overview

Editors:
  1. Sören Auer

    1. TIB and Leibniz University, Hannover, Germany

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    You can also search for this editor in PubMed   Google Scholar

  2. Maria-Esther Vidal

    1. TIB and Leibniz University, Hannover, Germany

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 11371)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: DILS 2018.

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Table of contents (20 papers)

  1. Front Matter

    Pages I-XI
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  2. Big Biomedical Data Integration and Management

    1. Front Matter

      Pages 1-1
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    2. Do Scaling Algorithms Preserve Word2Vec Semantics? A Case Study for Medical Entities

      • Janus Wawrzinek, José María González Pinto, Philipp Markiewka, Wolf-Tilo Balke
      Pages 3-16

    3. Combining Semantic and Lexical Measures to Evaluate Medical Terms Similarity

      • Silvio Domingos Cardoso, Marcos Da Silveira, Ying-Chi Lin, Victor Christen, Erhard Rahm, Chantal Reynaud-Delaître et al.
      Pages 17-32

    4. Construction and Visualization of Dynamic Biological Networks: Benchmarking the Neo4J Graph Database

      • Lena Wiese, Chimi Wangmo, Lukas Steuernagel, Armin O. Schmitt, Mehmet Gültas
      Pages 33-43

    5. A Knowledge-Driven Pipeline for Transforming Big Data into Actionable Knowledge

      • Maria-Esther Vidal, Kemele M. Endris, Samaneh Jozashoori, Guillermo Palma
      Pages 44-49

    6. Leaving No Stone Unturned: Using Machine Learning Based Approaches for Information Extraction from Full Texts of a Research Data Warehouse

      • Johanna Fiebeck, Hans Laser, Hinrich B. Winther, Svetlana Gerbel
      Pages 50-58

  3. Data Exploration in the Life Sciences

    1. Front Matter

      Pages 59-59
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    2. Towards Research Infrastructures that Curate Scientific Information: A Use Case in Life Sciences

      • Markus Stocker, Manuel Prinz, Fatemeh Rostami, Tibor Kempf
      Pages 61-74

    3. Interactive Visualization for Large-Scale Multi-factorial Research Designs

      • Andreas Friedrich, Luis de la Garza, Oliver Kohlbacher, Sven Nahnsen
      Pages 75-84

    4. FedSDM: Semantic Data Manager for Federations of RDF Datasets

      • Kemele M. Endris, Maria-Esther Vidal, Sören Auer
      Pages 85-90

    5. Poster Paper Data Integration for Supporting Biomedical Knowledge Graph Creation at Large-Scale

      • Samaneh Jozashoori, Tatiana Novikova, Maria-Esther Vidal
      Pages 91-96

    6. DISBi: A Flexible Framework for Integrating Systems Biology Data

      • Rüdiger Busche, Henning Dannheim, Dietmar Schomburg
      Pages 97-102

  4. Biomedical Data Analytics

    1. Front Matter

      Pages 103-103
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    2. Using Machine Learning to Distinguish Infected from Non-infected Subjects at an Early Stage Based on Viral Inoculation

      • Ghanshyam Verma, Alokkumar Jha, Dietrich Rebholz-Schuhmann, Michael G. Madden
      Pages 105-121

    3. Automated Coding of Medical Diagnostics from Free-Text: The Role of Parameters Optimization and Imbalanced Classes

      • Luiz Virginio, Julio Cesar dos Reis
      Pages 122-134

    4. A Learning-Based Approach to Combine Medical Annotation Results

      • Victor Christen, Ying-Chi Lin, Anika Groß, Silvio Domingos Cardoso, Cédric Pruski, Marcos Da Silveira et al.
      Pages 135-143

    5. Knowledge Graph Completion to Predict Polypharmacy Side Effects

      • Brandon Malone, Alberto García-Durán, Mathias Niepert
      Pages 144-149

  5. Big Biomedical Applications

    1. Front Matter

      Pages 151-151
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    2. Lung Cancer Concept Annotation from Spanish Clinical Narratives

      • Marjan Najafabadipour, Juan Manuel Tuñas, Alejandro Rodríguez-González, Ernestina Menasalvas
      Pages 153-163
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  1. Data Integration in the Life Sciences

Keywords

About this book

This book constitutes revised selected papers from the 13th International Conference on Data Integration in the Life Sciences, DILS 2018, held in Hannover, Germany, in November 2018.

The 5 full, 8 short, 3 poster and 4 demo papers presented in this volume were carefully reviewed and selected from 22 submissions. The papers are organized in topical sections named: big biomedical data integration and management; data exploration in the life sciences; biomedical data analytics; and big biomedical applications.

Editors and Affiliations

  • TIB and Leibniz University, Hannover, Germany

    Sören Auer, Maria-Esther Vidal

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