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Comparative Genomics

16th International Conference, RECOMB-CG 2018, Magog-Orford, QC, Canada, October 9-12, 2018, Proceedings

  • Conference proceedings
  • © 2018

Overview

Editors:
  1. Mathieu Blanchette

    1. McGill University, Montréal, Canada

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    You can also search for this editor in PubMed   Google Scholar

  2. Aïda Ouangraoua

    1. Université de Sherbrooke, Sherbrooke, Canada

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 11183)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RECOMB-CG 2018.

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Table of contents (18 papers)

  1. Front Matter

    Pages I-X
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  2. Genome Rearrangements

    1. Front Matter

      Pages 1-1
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    2. A Cubic Algorithm for the Generalized Rank Median of Three Genomes

      • Leonid Chindelevitch, Joao Meidanis
      Pages 3-27

    3. The Rooted SCJ Median with Single Gene Duplications

      • Aniket C. Mane, Manuel Lafond, Pedro Feijão, Cedric Chauve
      Pages 28-48

    4. A General Framework for Genome Rearrangement with Biological Constraints

      • Pijus Simonaitis, Annie Chateau, Krister M. Swenson
      Pages 49-71

    5. Estimation of the True Evolutionary Distance Under the INFER Model

      • Alexey Zabelkin, Nikita Alexeev
      Pages 72-87

  3. Genome Sequencing

    1. Front Matter

      Pages 89-89
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    2. On the Hardness of Approximating Linearization of Scaffolds Sharing Repeated Contigs

      • Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
      Pages 91-107

    3. Detecting Large Indels Using Optical Map Data

      • Xian Fan, Jie Xu, Luay Nakhleh
      Pages 108-127

  4. Applied Comparative Genomics

    1. Front Matter

      Pages 129-129
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    2. mClass: Cancer Type Classification with Somatic Point Mutation Data

      • Md Abid Hasan, Stefano Lonardi
      Pages 131-145

    3. Speciation and Rate Variation in a Birth-and-Death Account of WGD and Fractionation; the Case of Solanaceae

      • Yue Zhang, Chunfang Zheng, David Sankoff
      Pages 146-160

  5. Reconciliation and Coalescence

    1. Front Matter

      Pages 161-161
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    2. Detecting Introgression in Anopheles Mosquito Genomes Using a Reconciliation-Based Approach

      • Cedric Chauve, Jingxue Feng, Liangliang Wang
      Pages 163-178

    3. Reconstructing the History of Syntenies Through Super-Reconciliation

      • Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi et al.
      Pages 179-195

    4. On the Variance of Internode Distance Under the Multispecies Coalescent

      • Sébastien Roch
      Pages 196-206

  6. Phylogenetics

    1. Front Matter

      Pages 207-207
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    2. Linear-Time Algorithms for Some Phylogenetic Tree Completion Problems Under Robinson-Foulds Distance

      • Mukul S. Bansal
      Pages 209-226

    3. Multi-SpaM: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees

      • Thomas Dencker, Chris-André Leimeister, Michael Gerth, Christoph Bleidorn, Sagi Snir, Burkhard Morgenstern
      Pages 227-241

    4. FastNet: Fast and Accurate Statistical Inference of Phylogenetic Networks Using Large-Scale Genomic Sequence Data

      • Hussein A. Hejase, Natalie VandePol, Gregory M. Bonito, Kevin J. Liu
      Pages 242-259
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Other volumes

  1. Comparative Genomics

Keywords

About this book

This book constitutes the proceedings of the 16th International Conference on Comparative Genomics, RECOMB-CG 2018, held in Magog-Orford, QC, Canada, in October 2018.
The 18 full papers presented were carefully reviewed and selected from 29 submissions. The papers cover topics such as: genome rearrangements; genome sequencing; applied comparative genomics; reconciliation and coalescence; and phylogenetics.

Editors and Affiliations

  • McGill University, Montréal, Canada

    Mathieu Blanchette

  • Université de Sherbrooke, Sherbrooke, Canada

    Aïda Ouangraoua

Bibliographic Information

  • Book Title: Comparative Genomics

  • Book Subtitle: 16th International Conference, RECOMB-CG 2018, Magog-Orford, QC, Canada, October 9-12, 2018, Proceedings

  • Editors: Mathieu Blanchette, Aïda Ouangraoua

  • Series Title: Lecture Notes in Computer Science

  • DOI: https://doi.org/10.1007/978-3-030-00834-5

  • Publisher: Springer Cham

  • eBook Packages: Computer Science, Computer Science (R0)

  • Copyright Information: Springer Nature Switzerland AG 2018

  • Softcover ISBN: 978-3-030-00833-8Published: 08 September 2018

  • eBook ISBN: 978-3-030-00834-5Published: 04 October 2018

  • Series ISSN: 0302-9743

  • Series E-ISSN: 1611-3349

  • Edition Number: 1

  • Number of Pages: X, 325

  • Number of Illustrations: 82 b/w illustrations

  • Topics: Computational Biology/Bioinformatics

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