Skip to main content
  • Book
  • © 2013

Proteomics for Biomarker Discovery

  • Includes cutting-edge methods and protocols in the MiMB standard format
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 1002)

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access

This is a preview of subscription content, log in via an institution to check for access.

Table of contents (24 protocols)

  1. Front Matter

    Pages i-xi
  2. Affinity Depletion of Plasma and Serum for Mass Spectrometry-Based Proteome Analysis

    • Julian A. J. Jaros, Paul C. Guest, Sabine Bahn, Daniel Martins-de-Souza
    Pages 1-11
  3. Tissue Sample Preparation for Biomarker Discovery

    • Yoshiyuki Suehara, Daisuke Kubota, Tsuyoshi Saito
    Pages 13-23
  4. Analysis of Secreted Proteins

    • Valeria Severino, Annarita Farina, Angela Chambery
    Pages 37-60
  5. Proteomic Analysis of Frozen Tissue Samples Using Laser Capture Microdissection

    • Sumana Mukherjee, Jaime Rodriguez-Canales, Jeffrey Hanson, Michael R. Emmert-Buck, Michael A. Tangrea, DaRue A. Prieto et al.
    Pages 71-83
  6. iTRAQ-Labeling for Biomarker Discovery

    • Leroi V. DeSouza, Sébastien N. Voisin, K. W. Michael Siu
    Pages 105-114
  7. Analysis of Glycoproteins for Biomarker Discovery

    • Jintang He, Yashu Liu, Jing Wu, David M. Lubman
    Pages 115-122
  8. SILAC in Biomarker Discovery

    • Benjamin C. Orsburn
    Pages 123-131
  9. Trypsin-Mediated 18O/16O Labeling for Biomarker Discovery

    • Xiaoying Ye, King C. Chan, DaRue A. Prieto, Brian T. Luke, Donald J. Johann Jr., Luke H. Stockwin et al.
    Pages 133-149
  10. Informatics of Protein and Posttranslational Modification Detection via Shotgun Proteomics

    • Jerry D. Holman, Surendra Dasari, David L. Tabb
    Pages 167-179
  11. Quantitation of Met Tyrosine Phosphorylation Using MRM-MS

    • Zhaojing Meng, Apurva K. Srivastava, Ming Zhou, Timothy Veenstra
    Pages 181-193
  12. Preparation of Human Serum for Prolactin Measurement by Multiple Reaction Monitoring Mass Spectrometry

    • Timothy J. Waybright, Xia Xu, Jessica M. Faupel-Badger, Zhen Xiao
    Pages 195-203
  13. Label-Free Quantitative Shotgun Proteomics Using Normalized Spectral Abundance Factors

    • Karlie A. Neilson, Tim Keighley, Dana Pascovici, Brett Cooke, Paul A. Haynes
    Pages 205-222
  14. Phosphopeptide Microarrays for Comparative Proteomic Profiling of Cellular Lysates

    • Liqian Gao, Hongyan Sun, Mahesh Uttamchandani, Shao Q. Yao
    Pages 233-251

About this book

With the advent of proteomics came the development of technologies, primarily mass spectrometry, which allowed high-throughput identification of proteins in complex mixtures.  While the mass spectrometer resides at the heart of proteomics, its ability to characterize biological samples is only as good as the sample preparation and data analysis tools used in any study.  In Proteomics for Biomarker Discovery, expert researchers in the field detail many of the methods which are now commonly used to study proteomics. These include methods and techniques include both label-free approaches and those that utilize stable isotopes incorporated both during cell growth or added via a chemical reaction once the proteome is extracted from the cell. Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.

 

 

Authoritative and practical, Proteomics for Biomarker Discovery seeks to aid scientists in the further study the different sample preparation and data analysis tools used in proteomics today.

Editors and Affiliations

  • , Laboratory of Proteomics and Analytical, Frederick National Laboratory for Cancer, Frederick, USA

    Ming Zhou, Timothy Veenstra

Bibliographic Information

  • Book Title: Proteomics for Biomarker Discovery

  • Editors: Ming Zhou, Timothy Veenstra

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-62703-360-2

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2013

  • Hardcover ISBN: 978-1-62703-359-6Published: 27 April 2013

  • Softcover ISBN: 978-1-4939-5999-0Published: 23 August 2016

  • eBook ISBN: 978-1-62703-360-2Published: 15 June 2013

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XI, 320

  • Number of Illustrations: 23 b/w illustrations, 34 illustrations in colour

  • Topics: Protein Science, Proteomics

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access