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  • © 2012

RNA Abundance Analysis

Methods and Protocols

  • Provides step-by-step laboratory protocols, from conventional methods to state-of-the-art high throughput approaches and even computational data processing techniques
  • Contains expert tips on troubleshooting known pitfalls
  • Lists the necessary materials and provides the needed background information for all experiments

Part of the book series: Methods in Molecular Biology (MIMB, volume 883)

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Table of contents (17 protocols)

  1. Front Matter

    Pages i-xiii
  2. SuperSAGE: Powerful Serial Analysis of Gene Expression

    • Hideo Matsumura, Naoya Urasaki, Kentaro Yoshida, Detlev H. Krüger, Günter Kahl, Ryohei Terauchi
    Pages 1-17
  3. Northern Blot Analysis for Expression Profiling of mRNAs and Small RNAs

    • Ankur R. Bhardwaj, Ritu Pandey, Manu Agarwal, Surekha Katiyar-Agarwal
    Pages 19-45
  4. Strand-Specific RNA-seq Applied to Malaria Samples

    • Nadia Ponts, Duk-Won D. Chung, Karine G. Le Roch
    Pages 59-73
  5. RNA In Situ Hybridization in Arabidopsis

    • Miin-Feng Wu, Doris Wagner
    Pages 75-86
  6. Laser Microdissection of Cells and Isolation of High-Quality RNA After Cryosectioning

    • Marta Barcala, Carmen Fenoll, Carolina Escobar
    Pages 87-95
  7. Detection and Quantification of Alternative Splicing Variants Using RNA-seq

    • Douglas W. Bryant Jr, Henry D. Priest, Todd C. Mockler
    Pages 97-110
  8. RNAse Mapping and Quantitation of RNA Isoforms

    • Lakshminarayan K. Venkatesh, Olufemi Fasina, David J. Pintel
    Pages 121-129
  9. Detection and Quantification of Viral and Satellite RNAs in Plant Hosts

    • Sun-Jung Kwon, Jang-Kyun Seo, A. L. N. Rao
    Pages 131-141
  10. Isolation and Profiling of Protein-Associated Small RNAs

    • Hongwei Zhao, Yifan Lii, Pei Zhu, Hailing Jin
    Pages 165-176
  11. New Virus Discovery by Deep Sequencing of Small RNAs

    • Kashmir Singh, Ravneet Kaur, Wenping Qiu
    Pages 177-191
  12. Computational Analysis of RNA-seq

    • Scott A. Givan, Christopher A. Bottoms, William G. Spollen
    Pages 201-219
  13. Back Matter

    Pages 229-231

About this book

RNA abundance analysis is one of the most important approaches for gene expression studies in the field of molecular biology. In RNA Abundance Analysis: Methods and Protocols, expert researchers cover a wide range of techniques on RNA extraction, detection, quantification, visualization, and genome-wide profiling, from conventional methods to state-of-the-art high throughput approaches.  This volume includes detailed techniques to examine mRNAs, small non-coding RNAs, protein-associated small RNAs, sulfur-containing RNAs, viral and satellite RNAs, RNA isoforms, and alternatively spliced RNA variants from various organisms, as well as key discussions of computational data processing for genome-wide datasets.  Written for the highly successful Methods in Molecular Biology™ series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

 

Essential and easy to use, RNA Abundance Analysis: Methods and Protocols provides a comprehensive set of techniques and methods on isolating and analyzing mRNAs, small RNAs, and modified RNAs, which can assist you in your gene expression studies.

Editors and Affiliations

  • , Dept. Plant Pathology & Microbiology, University of California, Riverside, USA

    Hailing Jin

  • , Division of Plant Sciences, University of Missouri, Columbia, USA

    Walter Gassmann

Bibliographic Information

  • Book Title: RNA Abundance Analysis

  • Book Subtitle: Methods and Protocols

  • Editors: Hailing Jin, Walter Gassmann

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-61779-839-9

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2012

  • Hardcover ISBN: 978-1-61779-838-2Published: 21 May 2012

  • Softcover ISBN: 978-1-4939-5916-7Published: 23 August 2016

  • eBook ISBN: 978-1-61779-839-9Published: 16 May 2012

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XIII, 231

  • Number of Illustrations: 22 b/w illustrations

  • Topics: Human Genetics, Gene Expression

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access