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  • © 2012

Genomic Structural Variants

Methods and Protocols

Editors:

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 838)

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Table of contents (18 protocols)

  1. Front Matter

    Pages i-xi
  2. What Have Studies of Genomic Disorders Taught Us About Our Genome?

    • Alexandra D. Simmons, Claudia M. B. Carvalho, James R. Lupski
    Pages 1-27
  3. Microdeletion and Microduplication Syndromes

    • Lisenka E. L. M. Vissers, PaweÅ‚ Stankiewicz
    Pages 29-75
  4. Structural Genomic Variation in Intellectual Disability

    • Rolph Pfundt, Joris A. Veltman
    Pages 77-95
  5. Copy Number Variation and Psychiatric Disease Risk

    • Rebecca J. Levy, Bin Xu, Joseph A. Gogos, Maria Karayiorgou
    Pages 97-113
  6. Detection and Characterization of Copy Number Variation in Autism Spectrum Disorder

    • Christian R. Marshall, Stephen W. Scherer
    Pages 115-135
  7. Structural Variation in Subtelomeres

    • M. Katharine Rudd
    Pages 137-149
  8. Array-Based Approaches in Prenatal Diagnosis

    • Paul D. Brady, Koenraad Devriendt, Jan Deprest, Joris R. Vermeesch
    Pages 151-171
  9. Structural Variation and Its Effect on Expression

    • Louise Harewood, Evelyne Chaignat, Alexandre Reymond
    Pages 173-186
  10. Population Genetic Nature of Copy Number Variation

    • Per Sjödin, Mattias Jakobsson
    Pages 209-223
  11. Structural Genetic Variation in the Context of Somatic Mosaicism

    • Jan P. Dumanski, Arkadiusz Piotrowski
    Pages 249-272
  12. Online Resources for Genomic Structural Variation

    • Tam P. Sneddon, Deanna M. Church
    Pages 273-289
  13. Targeted Screening and Validation of Copy Number Variations

    • Shana Ceulemans, Karlijn van der Ven, Jurgen Del-Favero
    Pages 311-328
  14. Massively Parallel Sequencing Approaches for Characterization of Structural Variation

    • Daniel C. Koboldt, David E. Larson, Ken Chen, Li Ding, Richard K. Wilson
    Pages 369-384
  15. Back Matter

    Pages 385-386

About this book

The completion of a consensus draft sequence for the human genome was the starting point for more thorough investigations of individual genome variation.  The development of array-based strategies made it possible to look at our genome in new ways and for new types of variation to be discovered and characterized. Characterization of copy number variation and other forms of structural genetic variation has highlighted the complexity of human genetic variation and also provided significant insight into the evolution and dynamic nature of our genome. Genomic Structural Variants: Methods and Protocols provides an in-depth description of the developments in our understanding of structural genetic variation and its implications for human disease, from the introduction of microarrays up to current state-of-the-art sequencing strategies. It covers the major technologies used for research and diagnostics as well as web-based resources for variation data, and it then goes into depth regarding specific regions of the genome that differ in variation content. Specific patient groups where copy number variation has been shown to be of great importance are highlighted, and implications for both pre-natal and standard diagnostics are described. Written in the highly successful Methods in Molecular Biology™ series format, chapters contain introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls.

 

Authoritative and accessible, Genomic Structural Variants: Methods and Protocols provides complete comprehensive coverage of this burgeoning field.

Editors and Affiliations

  • Dept. Immunology, Genetics & Pathology, Uppsala University, Uppsala, Sweden

    Lars Feuk

Bibliographic Information

  • Book Title: Genomic Structural Variants

  • Book Subtitle: Methods and Protocols

  • Editors: Lars Feuk

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-61779-507-7

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2012

  • Hardcover ISBN: 978-1-61779-506-0Published: 07 January 2012

  • Softcover ISBN: 978-1-4939-6189-4Published: 23 August 2016

  • eBook ISBN: 978-1-61779-507-7Published: 08 January 2012

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XI, 389

  • Topics: Human Genetics, Gene Function

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 159.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access