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  • © 2012

Ubiquitin Family Modifiers and the Proteasome

Reviews and Protocols

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 832)

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Table of contents (46 protocols)

  1. Front Matter

    Pages i-xvi
  2. Enzymology and Substrates of Ubiquitin Family Modifiers

    1. Front Matter

      Pages 13-13
    2. Structure and Evolution of Ubiquitin and Ubiquitin-Related Domains

      • A. Maxwell Burroughs, Lakshminarayan M. Iyer, L. Aravind
      Pages 15-63
    3. Analysis of Cellular SUMO and SUMO–Ubiquitin Hybrid Conjugates

      • Marion Schnellhardt, Kristina Uzunova, Veronika N. Bade, Anke Krause, Stefan R. Weisshaar, Gerrit J. K. Praefcke et al.
      Pages 81-92
    4. Recombinant Reconstitution of Sumoylation Reactions In Vitro

      • Annette Flotho, Andreas Werner, Tobias Winter, Andrea S. Frank, Heidi Ehret, Frauke Melchior
      Pages 93-110
    5. Reconstitution of SUMO-Dependent Ubiquitylation In Vitro

      • Kirstin Keusekotten, Gerrit J. K. Praefcke
      Pages 111-123
    6. Detection and Analysis of FAT10 Modification

      • Annette Aichem, Marcus Groettrup
      Pages 125-132
    7. Isolation of NEDDylated Proteins in Human Cells

      • Orsolya Leidecker, Dimitris P. Xirodimas
      Pages 133-140
    8. The ISG15 Conjugation System

      • Larissa A. Durfee, Jon M. Huibregtse
      Pages 141-149
    9. Pupylation: Proteasomal Targeting by a Protein Modifier in Bacteria

      • Kristin E. Burns, K. Heran Darwin
      Pages 151-160
  3. Recognition and Chain Formation of UbF Modifiers

    1. Front Matter

      Pages 161-161
    2. Role of UbL Family Modifiers and Their Binding Proteins in Cell Signaling

      • Sjoerd J. L. van Wijk, Magda Bienko, Ivan Dikic
      Pages 163-171
    3. Isolation of Ubiquitylated Proteins Using Tandem Ubiquitin-Binding Entities

      • Fabienne Aillet, Fernando Lopitz-Otsoa, Roland Hjerpe, Mónica Torres-Ramos, Valérie Lang, Manuel S. Rodríguez
      Pages 173-183
    4. Using Linkage-Specific Monoclonal Antibodies to Analyze Cellular Ubiquitylation

      • Kim Newton, Marissa L. Matsumoto, Ronald E. Ferrando, Katherine E. Wickliffe, Michael Rape, Robert F. Kelley et al.
      Pages 185-196
    5. Synthesis and Analysis of K11-Linked Ubiquitin Chains

      • Anja Bremm, David Komander
      Pages 219-228
    6. Detection and Quantitation of SUMO Chains by Mass Spectrometry

      • Ivan Matic, Ronald T. Hay
      Pages 239-247

About this book

The ubiquitin-proteasome system (UPS) and ubiquitin-related modifiers are not only involved in cellular protein quality control but also in the regulation of many fundamental cellular processes/pathways as well as in their disease-relevant aberrations. Ubiquitin Family Modifiers and Proteasome: Reviews and Protocols presents both novel developments in UPS research and important methods related to the main recent advances in the field of ubiquitin family modifiers. Divided into five convenient sections, this volume focuses on the enzymology and substrate identification of ubiquitin family modifiers, the recognition and chain formation of these modifiers, the analysis of proteasome biogenesis and function, protein quality control, and finally the use of small molecules and strategies to study or manipulate the function of the UPS and of ubiquitin family modifiers, respectively. Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls.

 

Authoritative and easily accessible, Ubiquitin Family Modifiers and Proteasome: Reviews and Protocols will be of great use to investigators and students engaged in both basic and applied research in life sciences.

Editors and Affiliations

  • Institut für Genetik, Universität Köln, Köln, Germany

    R. Jürgen Dohmen

  • Fak. Biologie, Universität Konstanz, Konstanz, Germany

    Martin Scheffner

Bibliographic Information

  • Book Title: Ubiquitin Family Modifiers and the Proteasome

  • Book Subtitle: Reviews and Protocols

  • Editors: R. Jürgen Dohmen, Martin Scheffner

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-61779-474-2

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2012

  • Hardcover ISBN: 978-1-61779-473-5Published: 14 February 2012

  • Softcover ISBN: 978-1-4939-5905-1Published: 23 August 2016

  • eBook ISBN: 978-1-61779-474-2Published: 14 February 2012

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XVI, 666

  • Number of Illustrations: 94 b/w illustrations, 39 illustrations in colour

  • Topics: Protein Science, Proteomics

Buy it now

Buying options

eBook USD 139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 179.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access