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  • © 2010

Lipidomics

Volume 2: Methods and Protocols

  • Regarding Volume 1 and 2:
  • Contains in-depth guides to isolation and processing of lipid samples, probes, lipid profiling, signaling, transport, and mapping
  • Provides examples utilizing key model systems
  • Presents oxidized lipids obtained from in vitro and in vivo biological material, redox platforms, high throughput systems, microscopy and imaging, and computer simulation
  • Serves as a comprehensive guide to technical applications
  • Explores bioinformatics strategy and statistical models for standardization of lipids
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 580)

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Table of contents (20 protocols)

  1. Front Matter

    Pages i-xii
  2. Oxidized Lipids

    1. Front Matter

      Pages 1-1
    2. Volatile Oxylipins and Related Compounds Formed Under Stress in Plants

      • Kenji Matsui, Koichi Sugimoto, Pattana Kakumyan, Sergey A. Khorobrykh, Jun’ichi Mano
      Pages 17-28
    3. Use of Lipidomics for Analyzing Glycerolipid and Cholesteryl Ester Oxidation by Gas Chromatography, HPLC, and On-line MS

      • Arnis Kuksis, Jukka-Pekka Suomela, Marko Tarvainen, Heikki Kallio
      Pages 39-91
    4. Lipid Raft-Redox Signaling Platforms in Plasma Membrane

      • Fan Yi, Si Jin, Pin-Lan Li
      Pages 93-107
    5. Mass Spectrometry Analysis of Polyisoprenoids Alcohols and Carotenoids via ESI(Li+)-MS/MS

      • Fabio Luiz D’Alexandri, Renata Tonhosolo, Emilia A. Kimura, Alejandro Miguel Katzin
      Pages 109-128
    6. Mass-Spectrometric Characterization of Phospholipids and Their Hydroperoxide Derivatives In Vivo: Effects of Total Body Irradiation

      • Yulia Y. Tyurina, Vladimir A. Tyurin, Valentina I. Kapralova, Andrew A. Amoscato, Michael W. Epperly, Joel S. Greenberger et al.
      Pages 153-183
  3. Trafficking and Profiling

    1. Front Matter

      Pages 186-186
    2. Imaging Lipid Membrane Domains with Lipid-Specific Probes

      • Françoise Hullin-Matsuda, Reiko Ishitsuka, Miwa Takahashi, Toshihide Kobayashi
      Pages 203-220
    3. Monitoring Sterol Uptake, Acetylation, and Export in Yeast

      • Vineet Choudhary, Roger Schneiter
      Pages 221-232
    4. Methods to Monitor Fatty Acid Transport Proceeding Through Vectorial Acylation

      • Elsa Arias-Barrau, Concetta C. DiRusso, Paul N. Black
      Pages 233-249
    5. Activity-Based Profiling of Lipases in Living Cells

      • Maximilian Schicher, Iris Jesse, Ruth Birner-Gruenberger
      Pages 251-266
  4. Software and Bioinformatics

    1. Front Matter

      Pages 284-284
    2. Instrument-Independent Software Tools for the Analysis of MS–MS and LC–MS Lipidomics Data

      • Perttu Haimi, Krishna Chaithanya, Ville Kainu, Martin Hermansson, Pentti Somerharju
      Pages 285-294

About this book

Essential in biological functions like cell signaling and, when disturbed, a likely cause of disease, lipids have proven to be a vital force in cell biology. In Lipidomics: Methods and Protocols, an international panel of experts present a wide variety of reviewed as well as unpublished data on isolation techniques, structural analysis, lipid rafts, lipid trafficking and profiling, biomarkers, lipid peroxidation, biostatistics applied to lipids, software tools, and bioinformatics. These studies range from simple systems, such as in yeast, to complex biological models. Samples used in these studies include: mitochondria, microsomes, endosomal membranes, RBS and plasma membranes, vesicles, caveolae, liposomes, macrophages, meibum, brain, microglia, retina, adipose tissue, keratinocytes, pulmonary surfactant, and hepatic cultures. Volume 2 focuses on oxidized lipids, trafficking and profiling, software, bioinformatics, and biostatistics. Written in the highly successful Methods in Molecular Biologyâ„¢ series format, the chapters include useful introductions to their respective topics, lists of the necessary equipment and materials, step-by-step, readily reproducible laboratory protocols, and authoritative notes on troubleshooting and avoiding common pitfalls.

Comprehensive and cutting-edge, Lipidomics: Methods and Protocols will support researchers who wish to increase their utilization of lipidomics, which will certainly lead to more powerful technology, improved diagnostic-prognostic capabilities, and the identification of new valuable products.

Editors and Affiliations

  • Mars Hill, U.S.A.

    Donald Armstrong

Bibliographic Information

  • Book Title: Lipidomics

  • Book Subtitle: Volume 2: Methods and Protocols

  • Editors: Donald Armstrong

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-60761-325-1

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2010

  • Hardcover ISBN: 978-1-60761-324-4Published: 29 October 2009

  • Softcover ISBN: 978-1-61779-655-5Published: 09 August 2012

  • eBook ISBN: 978-1-60761-325-1Published: 28 September 2009

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XII, 390

  • Number of Illustrations: 105 b/w illustrations, 5 illustrations in colour

  • Topics: Lipidology, Biochemistry, general, Cell Biology, Membrane Biology

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 159.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access