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  • © 2009

Cardiovascular Genomics

Methods and Protocols

  • Covers a range of phenotyping, bioinformatics, and statistical methods required for cardiovascular genomic research
  • Detailed protocols for evaluating important cardiovascular diseases in rodents
  • Highlights expert insights to avoid or overcome technical difficulties phenotyping rodent models
  • Includes methods for integrating genotype, gene expression, and phenotype data from rodents and humans
  • Provides bioinformatics and statistical methods applicable to genomic research into many varied diseases
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 573)

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Table of contents (18 protocols)

  1. Front Matter

    Pages i-x
  2. Modes of Defining Atherosclerosis in Mouse Models: Relative Merits and Evolving Standards

    • Alan Daugherty, Hong Lu, Deborah A. Howatt, Debra L. Rateri
    Pages 1-15
  3. Non-invasive Blood Pressure Measurement in Mice

    • Minjie Feng, Keith DiPetrillo
    Pages 45-55
  4. Measuring Kidney Function in Conscious Mice

    • David L. Mattson
    Pages 75-94
  5. Ischemic Stroke in Mice and Rats

    • Aysan Durukan, Turgut Tatlisumak
    Pages 95-114
  6. Echocardiographic Examination in Rats and Mice

    • Jing Liu, Dean F. Rigel
    Pages 139-155
  7. Quantitative Trait Locus Analysis Using J/qtl

    • Randy Smith, Keith Sheppard, Keith DiPetrillo, Gary Churchill
    Pages 175-188
  8. Computing Genetic Imprinting Expressed by Haplotypes

    • Yun Cheng, Arthur Berg, Song Wu, Yao Li, Rongling Wu
    Pages 189-212
  9. Haplotype Association Mapping in Mice

    • Shirng-Wern Tsaih, Ron Korstanje
    Pages 213-222
  10. Candidate Gene Association Analysis

    • Jonathan B. Singer
    Pages 223-230
  11. Genome-Wide Association Study in Humans

    • J. Gustav Smith, Christopher Newton-Cheh
    Pages 231-258
  12. Bioinformatics Analysis of Microarray Data

    • Yunyu Zhang, Joseph Szustakowski, Martina Schinke
    Pages 259-284
  13. eQTL Analysis in Mice and Rats

    • Bruno M. Tesson, Ritsert C. Jansen
    Pages 285-309
  14. eQTL Analysis in Humans

    • Lude Franke, Ritsert C. Jansen
    Pages 311-328
  15. A Systematic Strategy for the Discovery of Candidate Genes Responsible for Phenotypic Variation

    • Paul Fisher, Harry Noyes, Stephen Kemp, Robert Stevens, Andrew Brass
    Pages 329-345
  16. Back Matter

    Pages 347-350

About this book

As two of the leading causes of death worldwide, heart disease and stroke represent a clear target for genomic research aimed at deciphering the genes and cellular pathways that underlie cardiovascular disease and creating improved therapies. In Cardiovascular Genomics: Methods and Protocols, experts in the field provide methods for cardiovascular phenotyping of rodent models in the first section of the volume and for statistical and bioinformatic integration of phenotype data with genome-wide genotype and expression data in the second section. Understanding these diverse methods will allow an individual laboratory to utilize these genomic methods independently or to better prepare for collaboration with scientists having expertise in other disciplines in order to uncover genes affecting cardiovascular disease. Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary equipment, materials, and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls.

Cutting-edge and easy-to-use, Cardiovascular Genomics: Methods and Protocols will enable researchers to identify causal genes and novel molecular targets that can lead to vital new treatments for cardiovascular disease.

Reviews

From the reviews: “The book appears to provide a practical guide on a number of laboratory-based molecular methods that are likely to be useful in carrying out human and animal experiments to generate data and information for … complex cardiovascular conditions. … Although this book is well produced with excellent layout, it will probably find a … place on any researcher’s book shelf. … laboratories may consider keeping a copy in the library for quick reference and useful in teaching and training of young investigators in molecular genomics.” (Dhavendra Kumar, Human Genetics, Vol. 127, 2010)

Editors and Affiliations

  • Research, Novartis Institute for Biomedical, East Hanover, U.S.A.

    Keith DiPetrillo

Bibliographic Information

  • Book Title: Cardiovascular Genomics

  • Book Subtitle: Methods and Protocols

  • Editors: Keith DiPetrillo

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-60761-247-6

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2009

  • Hardcover ISBN: 978-1-60761-246-9Published: 25 September 2009

  • Softcover ISBN: 978-1-61779-643-2Published: 07 March 2012

  • eBook ISBN: 978-1-60761-247-6Published: 18 September 2009

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: X, 350

  • Number of Illustrations: 84 b/w illustrations

  • Topics: Cardiology, Human Genetics, Gene Expression

Buy it now

Buying options

eBook USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access