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Horizontal Gene Transfer

Genomes in Flux

  • Reviews both wetlab and in silico methods for assessing horizontal gene transfer
  • Brings together the often controversial viewpoints on the impact of HGT on the tree of life and microbial speciation
  • Provides an easily accessible reference volume for the current knowledge of the extent and impact of HGT
  • Covers a wide range of HGT detection methods
  • Covers everything from genome based analysis to integron biology and plasmid transfer in biofilms
  • Comprehensive guide to HGT detection and the study of HGT
  • Presents debates on how HGT effects speciation and concepts of microbial speciation
  • Contains contributions by the leading scientists working in the field

Part of the book series: Methods in Molecular Biology (MIMB, volume 532)

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Table of contents (30 protocols)

  1. Front Matter

    Pages i-xix
  2. Introduction

    1. Front Matter

      Pages 1-1
    2. Gene Transfer: Who Benefits?

      • Lorraine Olendzenski, Johann Peter Gogarten
      Pages 3-9
  3. Definitions, Philosophy, and Implications of HGT

    1. Front Matter

      Pages 11-11
    2. Defining the Mobilome

      • Janet L. Siefert
      Pages 13-27
    3. Persistence Mechanisms of Conjugative Plasmids

      • Martin Iain Bahl, Lars Hestbjerg Hansen, Søren J. Sørensen
      Pages 73-102
    4. The Integron/Gene Cassette System: An Active Player in Bacterial Adaptation

      • Maurizio Labbate, Rebecca Josephine Case, Hatch W. Stokes
      Pages 103-125
    5. Ancient Gene Transfer as a Tool in Phylogenetic Reconstruction

      • Jinling Huang, Johann Peter Gogarten
      Pages 127-139
    6. The Tree of Life Viewed Through the Contents of Genomes

      • Christopher H. House
      Pages 141-161
  4. Methods

    1. Front Matter

      Pages 193-193
    2. Composition-Based Methods to Identify Horizontal Gene Transfer

      • Diego Cortez, Luis Delaye, Antonio Lazcano, Arturo Becerra
      Pages 215-225
    3. Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains

      • Martin Iain Bahl, Gunnar Oregaard, Søren J. Sørensen, Lars Hestbjerg Hansen
      Pages 257-268
    4. Experimental Evolution of an Essential Bacillus Gene in an E. coli Host

      • Maia Larios-Sanz, Michael Travisano
      Pages 269-287

About this book

Horizontal gene transfer (HGT) events encompass processes as varied as the exchange of genetic material between microbes coexisting in the same environment, between symbiotic bacteria and their eukaryotic hosts, and the evolution of organelles by symbiosis, in which whole genomes are acquired.  In Horizontal Gene Transfer: Genomes in Flux, expert researchers contribute an overview of HGT concepts as well as specific case histories that highlight the most current progress to inspire future work. Divided into three sections, the volume begins with an overview of terminology, concepts and the implications of HGT on current evolutionary thought and philosophy, and continues with methods involving computer and bioinformatics analyses of genomic data as well as molecular biology techniques for identifying, quantifying, and differentiating instances of HGT. A section of case studies follows, which provides detailed accounts of how HGT has shaped evolution across the diversity of organisms and organismal lineages. As a volume of the highly successful Methods in Molecular Biologyâ„¢ series, this work provides the kind of detailed description and implementation advice that is crucial for getting optimal results.

Cutting-edge and thoroughly detailed, Horizontal Gene Transfer: Genomes in Flux examines how HGT has contributed to genome evolution and how understanding HGT impacts our ability to accurately reconstruct and comprehend the web-like evolutionary history in order to aid scientists in furthering their own research.

Reviews

From the reviews:

"The case studies … presented are so well illustrated and convincely debated that the reader is perceiving the impression that we (our genome, the genomes!!) are hosting HGT and surrounded by HGT which are occuring in each second of our life and all throughout the life around us. … I think the book should be suggested not only as a reference text for those involved in this field of research but also to students of the graduate and PhD courses … ." (CarloAlberto Redi, European Journal of Histochemistry, October, 2009)

"The major strength of this book lies in the fundamental concepts that are discussed, in depth, by the chapter’s authors. … this book is suitable for individuals interested in the consequences of HGT … . This book will appeal to graduate students and researchers in molecular biology, bioinformatics and evolutionary biology. An institutional copy is a must, and it would also make an excellent addition to the personal collections of principle investigators/laboratories in the field." (Adam Roberts, Microbiology Today, November, 2009)

Editors and Affiliations

  • University of Connecticut, Mansfield Center, USA

    Maria Boekels Gogarten

  • Dept. Molecular & Cell Biology, University of Connecticut, Storrs, USA

    Johann Peter Gogarten

  • Biology Department, St. Lawrence University, Canton, USA

    Lorraine C. Olendzenski

Bibliographic Information

  • Book Title: Horizontal Gene Transfer

  • Book Subtitle: Genomes in Flux

  • Editors: Maria Boekels Gogarten, Johann Peter Gogarten, Lorraine C. Olendzenski

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-60327-853-9

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2009

  • Hardcover ISBN: 978-1-60327-852-2Published: 11 March 2009

  • Softcover ISBN: 978-1-61737-918-5Published: 19 November 2010

  • eBook ISBN: 978-1-60327-853-9Published: 07 March 2009

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XX, 552

  • Topics: Microbiology, Microbial Genetics and Genomics, Evolutionary Biology

Buy it now

Buying options

eBook USD 189.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 249.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 329.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access