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  • © 2008

Bioinformatics

Volume II: Structure, Function and Applications

  • Encompasses topics from across the diverse field of bioinformatics through its broad scope approach
  • Over 80 authors from around the globe contribute to the two volumes, including many leading experts in their respective subjects
  • An inter-disciplinary collaboration involving biologists, biochemists, physicists, mathematicians, statisticians and computer scientists
  • Contains simplified descriptions, requiring a minimum of background knowledge, amenable to students and beginners in bioinformatics
  • References a wide variety of software tools and scripts, available online
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 453)

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Table of contents (25 protocols)

  1. Front Matter

    Pages i-xiv
  2. Structures

    1. UNAFold

      • Nicholas R. Markham, Michael Zuker
      Pages 3-31
    2. Protein Structure Prediction

      • Bissan Al-Lazikani, Emma E. Hill, Veronica Morea
      Pages 33-85
    3. An Introduction to Protein Contact Prediction

      • Nicholas Hamilton, Thomas Huber
      Pages 87-104
    4. Analysis of Mass Spectrometry Data in Proteomics

      • Rune Matthiesen, Ole N. Jensen
      Pages 105-122
    5. The Classification of Protein Domains

      • Russell L. Marsden, Christine A. Orengo
      Pages 123-146
  3. Inferring Function

    1. Inferring Function from Homology

      • Richard D. Emes
      Pages 149-168
    2. The Rosetta Stone Method

      • Shailesh V. Date
      Pages 169-180
    3. Phylogenetic Profiling

      • Shailesh V. Date, José M. Peregrín-Alvarez
      Pages 201-216
    4. Phylogenetic Shadowing

      • Dario Boffelli
      Pages 217-231
    5. Prediction of Regulatory Elements

      • Albin Sandelin
      Pages 233-244
    6. Expression and Microarrays

      • Joaquín Dopazo, Fátima Al-Shahrour
      Pages 245-255
    7. Identifying Components of Complexes

      • Nicolas Goffard, Georg Weiller
      Pages 257-265
    8. Integrating Functional Genomics Data

      • Insuk Lee, Edward M. Marcotte
      Pages 267-278
  4. Applications and Disease

    1. Computational Diagnostics with Gene Expression Profiles

      • Claudio Lottaz, Dennis Kostka, Florian Markowetz, Rainer Spang
      Pages 281-296
    2. Analysis of Quantitative Trait Loci

      • Mario Falchi
      Pages 297-326
    3. Molecular Similarity Concepts and Search Calculations

      • Jens Auer, Jürgen Bajorath
      Pages 327-347
    4. Optimization of the MAD Algorithm for Virtual Screening

      • Hanna Eckert, Jürgen Bajorath
      Pages 349-362

About this book

Not only is the quantity of life science data expanding, but new types of biological data continue to be introduced as a result of technological development and a growing understanding of biological systems. Methods for analyzing these data are an increasingly important component of modern biological research. In Bioinformatics, leading researchers in the field provide a selection of the most useful and widely applicable methods, able to be applied as is, or with minor variations, to many specific problems. Volume II: Structure, Function and Applications contains methods pertinent to the prediction of protein and RNA structures and the analysis and classification of structures, methods for inferring the function of previously identified genomic elements, chiefly protein-coding genes, medical applications in diagnostics and drug discovery, and "meta-methods" for developers of bioinformatics algorithms.

Reviews

From the reviews:

"In general, this book describes some of the most useful and widely used techniques in the field of bioinformatics. … it covers a wide variety of topics to satisfy the large audience involved in using and developing bioinformatics. … These will be of extreme importance to those involved in utilization and development of bioinformatics methods. The book is written for students and beginning level bioinformatics researchers. … This is a good reference in the field of bioinformatics, particularly for those who are just starting out." (Basabi Rana, Doody’s Review Service, September, 2008)

"Bioinformatics is presented … with a total of 51 chapters. … successfully cover the wide field of bioinformatics, providing many useful methods, the majority of which are accessible to the non-specialist. … will serve as a valuable reference and therefore may be most appropriate as an institutional purchase." (Conrad Nieduszynski, Microbiology Today, February, 2009)

"Volume II contains 25 chapters that cover computational approaches and theory in analyzing function and structure of protein and nucleic acid sequences. … give relatively in-depth coverage of many concepts that are applied by bioinformatics specialists. … Many of the chapters are example driven, with basic forays into bioinformatics analyses that will educate readers in both the theory and practical matter of running the analyses." (Jason E. Stajich, The Quarterly Review of Biology, Vol. 84, September, 2009)

"This volume emphasizes protein analysis and function recognition. … In summary, this book presents a number of bioinformatics tools and methods, ranging from protein structure prediction, to gene function inference, to microarray data profiling. … The book is very suitable for entry-level bioinformaticians and clinical researchers." (Hsun-Hsien Chang, ACM Computing Reviews, August, 2009)

Editors and Affiliations

  • School of Mathematical Sciences, Queensland University of Technology, Brisbane, Australia

    Jonathan M. Keith

Bibliographic Information

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access