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DNA-Protein Interactions

Principles and Protocols, Third Edition

  • Covers cutting edge techniques in chromatin studies, such as Nucleosome Mapping, Chromatin Immunoprecipitation and ChIP-on-chip
  • Contains many protocols for large scale analysis of genome-protein interaction and long-distance interaction between chromatin domains
  • Describes the use of many physical techniques like Atomic Force Microscopy, FRET, Surface Plasmon Resonance and Circular Dichroism
  • Accessible and highly usable protocols for in vivo and in vitro Footprinting, Electromobility Shift Assays, and other proven DNA-protein interaction assays
  • Offers authors' comments on delicate manipulations, information that rarely makes it into ordinary protocols

Part of the book series: Methods in Molecular Biology (MIMB, volume 543)

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Table of contents (38 protocols)

  1. Front Matter

    Pages i-xvii
  2. Filter-Binding Assays

    • Peter G. Stockley
    Pages 1-14
  3. Electrophoretic Mobility Shift Assays for the Analysis of DNA-Protein Interactions

    • Manon Gaudreault, Marie-Eve Gingras, Maryse Lessard, Steeve Leclerc, Sylvain L. Guérin
    Pages 15-35
  4. DNase I Footprinting

    • Benoît Leblanc, Tom Moss
    Pages 37-47
  5. Exonuclease III Footprinting on Immobilized DNA Templates

    • Patrizia Spitalny, Michael Thomm
    Pages 49-56
  6. Hydroxyl Radical Footprinting of Protein-DNA Complexes

    • Indu Jagannathan, Jeffrey J. Hayes
    Pages 57-71
  7. Uranyl Photofootprinting

    • Peter E. Nielsen
    Pages 87-96
  8. Ethylation Interference Footprinting of DNA-Protein Complexes

    • Iain W. Manfield, Peter G. Stockley
    Pages 105-120
  9. Identification of Sequence-Specific DNA-Binding Proteins by Southwestern Blotting

    • Simon Labbé, Jean-François Harrisson, Carl Séguin
    Pages 151-161
  10. Use of a Reporter Gene Assay in Yeast for Genetic Analysis of DNA-Protein Interactions

    • David R. Setzer, Deborah B. Schulman, Cathy V. Gunther, Michael J. Bumbulis
    Pages 219-241
  11. Chromatin Immunoprecipitation in Mammalian Cells

    • Amy Svotelis, Nicolas Gévry, Luc Gaudreau
    Pages 243-251
  12. Sequential Chromatin Immunoprecipitation Protocol: ChIP-reChIP

    • Mayra Furlan-Magaril, Héctor Rincón-Arano, Félix Recillas-Targa
    Pages 253-266
  13. Nucleosome Mapping

    • Nicolas Gévry, Amy Svotelis, Marc Larochelle, Luc Gaudreau
    Pages 281-291

About this book

Gene expression can mean the difference between a functional and non-functional genome, between health and disease, and with the development of transgenic crops, the difference between survival and starvation. In DNA-Protein Interactions: Principles and Protocols, Third Edition, this vital subject is brought up to date with protocols exploring the most cutting-edge developments in the field, including in vivo and genome-wide interaction techniques. Addressing topics such as chromatin immunoprecipitation, topological studies, photocrosslinking, FRET and imaging techniques, the volume fully updates and expands upon the successful previous editions. Written in the convenient and informative Methods in Molecular Biology™ series format, chapters include introductions to their respective subjects, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls.

Comprehensive and authoritative, DNA-Protein Interactions: Principles and Protocols, Third Edition serves as an ideal guide for all those exploring this dynamic, essential, and increasingly affordable area of research.

Reviews

Reviews of Previous Editions:

"The book, written by an impressive list of worldwide contributors, will provide readers with nearly all the necessary tools for studying DNA-protein interactions, making it a perfect cell laboratory manual." -Quarterly Review of Biology

"...a great laboratory resource for biochemists and molecular, cellular, and developmental biologists." - Today's Life Science

Bibliographic Information

  • Book Title: DNA-Protein Interactions

  • Book Subtitle: Principles and Protocols, Third Edition

  • Editors: Benoît Leblanc, Tom Moss

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-60327-015-1

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2009

  • Hardcover ISBN: 978-1-60327-014-4Published: 07 May 2009

  • Softcover ISBN: 978-1-61737-875-1Published: 19 November 2010

  • eBook ISBN: 978-1-60327-015-1Published: 20 April 2009

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 3

  • Number of Pages: XVIII, 680

  • Number of Illustrations: 131 b/w illustrations

  • Topics: Protein Science, Human Genetics, Proteomics

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 169.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access