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  • Book
  • © 2007

Cardiac Gene Expression

Methods and Protocols

  • Resources for the analysis of gene regulation data and SNPs
  • Comparative genomic approach for functionally annotating human DNA
  • Quantitative, real-time RT-PCR in cardiovascular research
  • In silico analysis of SNPs and other high-throughput data
  • Conditional targeting in the myocardium
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 366)

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Table of contents (20 protocols)

  1. Front Matter

    Pages i-xiii
  2. Cardiac Gene Expression

    1. Front Matter

      Pages 1-1
    2. Expression Profiling Using Affymetrix GeneChip® Probe Arrays

      • Martina Schinke-Braun, Jennifer A. Couget
      Pages 13-40
    3. Serial Analysis of Gene Expression (SAGE)

      • Kirill V. Tarasov, Sheryl A. Brugh, Yelena S. Tarasova, Kenneth R. Boheler
      Pages 41-59
  3. Cardiac Gene Regulation

    1. Front Matter

      Pages 107-107
    2. Quantitative (Real-Time) RT-PCR in Cardiovascular Research

      • Kevin John Ashton, John Patrick Headrick
      Pages 121-143
    3. RNase Protection Assay for Quantifying Gene Expression Levels

      • Yongxia Qu, Mohamed Boutjdir
      Pages 145-158
    4. In Situ Hybridization

      • Thierry P. Calmels, David Mazurais
      Pages 159-180
  4. Cardiac Gene Regulation

    1. Front Matter

      Pages 181-181
    2. Characterization of cis-Regulatory Elements and Transcription Factor Binding

      • Jim Jung-Ching Lin, Shaun E. Grosskurth, Shannon M. Harlan, Elisabeth A. Gustafson-Wagner, Qin Wang
      Pages 183-201
    3. Mapping Transcriptional Start Sites and In Silico DNA Footprinting

      • Martin E. Cullen, Paul J. R. Barton
      Pages 203-216
    4. Characterization of Cardiac Gene Promoter Activity

      • Hsiao-Huei Chen, Alexandre F. R. Stewart
      Pages 217-225
  5. In Silico Assessment of Regulatory cis-Elements and Gene Regulation

    1. Front Matter

      Pages 227-227
    2. Comparative Genomics

      • Jan-Fang Cheng, James R. Priest, Len A. Pennacchio
      Pages 229-251
    3. Developing Computational Resources in Cardiac Gene Expression

      • Michael B. Bober, Raimond Winslow
      Pages 253-263
  6. Cardiac Single Nucleotide Polymorphisms

    1. Front Matter

      Pages 265-265

About this book

Cardiac Gene Expression: Methods and Protocols presents both cutting-edge and established methods for studying cardiac gene expression. The protocols provide a template for solid research, and cover the process through screening, analysis, characterization, and functional confirmation of novel genes or known genes with a new function.

Section I, Cardiac Gene Expression Profiling: The Global Perspective, discusses several different approaches to examining, identifying, and analyzing changes in transcriptome gene expression. Section II, Cardiac Gene Regulation: Gene-Specific mRNA Measurement in the Myocardium, outlines more sensitive and gene-targeted expression methods. Section III, Cardiac Gene Regulation: Promoter Characterization in the Myocardium, provides protocols for the study of underlying gene regulation mechanisms by focusing on the interaction of transcription factors with their cognate cis binding elements. Section IV, In Silico Assessment of Regulatory cis-Elements and Gene Regulation, and Section V, Cardiac Single Network Polymorphisms, emphasize new analytical approaches for deciphering the functional elements buried in the 3 billion nucleotides of the human genome and other model genomes. The concluding section, Gene Overexpression and Targeting in the Myocardium, highlights methods that facilitate overexpression or cardiac-specific targeted gene deletion.

Reviews

"...a timely, detailed and well edited methodss text which would be a valuable addition to any cardiovascular research laboratory." -Molecular Biotechnology

Editors and Affiliations

  • Division of Cardiology, CVRL/Geffen School of Medicine at UCLA, Los Angeles

    Jun Zhang

  • Division of Cardiology, University of Louisville, Louisville

    Gregg Rokosh

Bibliographic Information

  • Book Title: Cardiac Gene Expression

  • Book Subtitle: Methods and Protocols

  • Editors: Jun Zhang, Gregg Rokosh

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-59745-030-0

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2007

  • Hardcover ISBN: 978-1-58829-352-7Published: 19 March 2007

  • Softcover ISBN: 978-1-61737-514-9Published: 09 October 2011

  • eBook ISBN: 978-1-59745-030-0Published: 03 February 2008

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XII, 366

  • Number of Illustrations: 65 b/w illustrations, 1 illustrations in colour

  • Topics: Biochemistry, general, Human Genetics, Cardiology, Bioinformatics

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access