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  • © 2007

PCR Primer Design

Editors:

  • Cutting-edge methods for genome-scale experiments and small-scale individual PCR amplifications
  • Highlights basic principles and software for PCR primer design
  • An exceptional reference for all those involved in studying the genome

Part of the book series: Methods in Molecular Biology (MIMB, volume 402)

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Table of contents (21 protocols)

  1. Front Matter

    Pages i-xiii
  2. Basic Principles and Software for PCR Primer Design

    1. Front Matter

      Pages 1-1
    2. OLIGO 7 Primer Analysis Software

      • Wojciech Rychlik
      Pages 35-59
    3. The Reference Point Method in Primer Design

      • Thomas Kämpke
      Pages 75-91
    4. Developing a Statistical Model for Primer Design

      • Jianping Huang, Anton Yuryev
      Pages 105-137
  3. Genome-Scale PCR Primer Design

    1. Front Matter

      Pages 139-139
    2. GST-PRIME

      • Dario Leister, Claudio Varotto
      Pages 141-157
    3. Genome-Scale Probe and Primer Design with PRIMEGENS

      • Gyan Prakash Srivastava, Dong Xu
      Pages 159-175
  4. Repeat Masking for PCR Primer Design

    1. Front Matter

      Pages 177-177
    2. Repeat Masking for PCR Primer Design

      1. SNPbox
        • Stefan Weckx, Peter De Rijk, Wim Glassee, Christine Van Broeckhoven, Jurgen Del-Favero
        Pages 178-199
      2. Fast Masking of Repeated Primer Binding Sites in Eukaryotic Genomes
        • Reidar Andreson, Lauris Kaplinski, Maido Remm
        Pages 201-217
  5. Multiplex PCR Primer Design

    1. Front Matter

      Pages 219-219
    2. Multiplex PCR Primer Design

      1. Degenerate Primer Design
        • Chaim Linhart, Ron Shamir
        Pages 220-244
      2. An Iterative Method for Selecting Degenerate Multiplex PCR Primers
        • Richard Souvenir, Jeremy Buhler, Gary Stormo, Weixiong Zhang
        Pages 245-267
      3. Primer Design for Multiplexed Genotyping
        • Lars Kaderali
        Pages 269-285
      4. MultiPLX
        • Lauris Kaplinski, Maido Remm
        Pages 287-303
      5. MultiPrimer
        • Rohan Fernandes, Steven Skiena
        Pages 305-314

About this book

In the past decade, molecular biology has been transformed from the art of cloning a single gene to a statistical science measuring and calculating properties of entire genomes. New high-throughput methods have been developed for genome sequencing and studying the cell at different systematic levels such as transcriptome, proteome, metabolome and other -omes. At the heart of most high-throughput methods is the technique of polymerase chain reaction (PCR). PCR Primer Design focuses on primer design, which is critical to both the efficiency and the accuracy of the PCR. With intricate descriptions of basic approaches as well as specialized methods, this volume is an exceptional reference for all those involved in studying the genome.

In PCR Primer Design, authors describe basic approaches for PCR primer design in addition to specialized methods. These state-of-the-art methods can be used for both genome-scale experiments and for small-scale individual PCR amplifications. This volume will be useful for organizations performing whole genome studies, companies designing instruments that utilize PCR, and individual scientists – geneticists, molecular biologists, molecular geneticists, and more – who routinely use PCR in their research.

Editors and Affiliations

  • Application Science Department, Ariadne Genomics Inc., Rockville, USA

    Anton Yuryev

Bibliographic Information

  • Book Title: PCR Primer Design

  • Editors: Anton Yuryev

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-59745-528-2

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2007

  • Hardcover ISBN: 978-1-58829-725-9Published: 02 August 2007

  • Softcover ISBN: 978-1-61737-743-3Published: 19 November 2010

  • eBook ISBN: 978-1-59745-528-2Published: 03 February 2008

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XIV, 432

  • Number of Illustrations: 128 b/w illustrations

  • Topics: Cell Biology, Human Genetics

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access