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Systems Chemical Biology

Methods and Protocols

  • Includes cutting-edge techniques
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 1888)

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Table of contents (16 protocols)

  1. Front Matter

    Pages i-xi
  2. PREDECT Protocols for Complex 2D/3D Cultures

    • Suzana Vidic, Marta F. Estrada, Kjersti Gjerde, Vítor E. Santo, Annika Osswald, Michaël Barbier et al.
    Pages 1-20
  3. Phenotypic Screening Using Mouse and Human Stem Cell-Based Models of Neuroinflammation and Gene Expression Analysis to Study Drug Responses

    • Masin Abo-Rady, Jessica Bellmann, Michael Glatza, Lara Marrone, Lydia Reinhardt, Santiago Tena et al.
    Pages 21-43
  4. Quantitative, Real-Time Measurements of Intracellular Target Engagement Using Energy Transfer

    • Matthew B. Robers, James D. Vasta, Cesear R. Corona, Rachel Friedman Ohana, Robin Hurst, Manisha A. Jhala et al.
    Pages 45-71Open Access
  5. Target Engagement of Small Molecules: Thermal Profiling Approaches on Different Levels

    • Elena S. Reckzeh, Andreas Brockmeyer, Malte Metz, Herbert Waldmann, Petra Janning
    Pages 73-98
  6. Visualizing Bioactive Small Molecules by Alkyne Tagging and Slit-Scanning Raman Microscopy

    • Jun Ando, Kosuke Dodo, Katsumasa Fujita, Mikiko Sodeoka
    Pages 99-114
  7. Examining Cellular Responses to Kinase Drug Inhibition Through Phosphoproteome Mapping of Substrates

    • Daniel Bucio-Noble, Crystal Semaan, Mark P. Molloy
    Pages 141-152
  8. CRISPR/Cas9-Based Chemogenomic Profiling in Mammalian Cells

    • Dominic Hoepfner, Gregory McAllister, Gregory R. Hoffman
    Pages 153-174
  9. Web-Based Tools for Polypharmacology Prediction

    • Mahendra Awale, Jean-Louis Reymond
    Pages 255-272
  10. In Silico Target Prediction for Small Molecules

    • Ryan Byrne, Gisbert Schneider
    Pages 273-309
  11. Back Matter

    Pages 311-315

About this book

This volume explores the latest available wet-lab techniques and computational methods to study in-cell small-molecule behavior and interactions with their targets. The chapters in this book discuss topics such as disease-relevant models for chemical biology studies, target engagement using cellular thermal shift assay or bioluminescence resonance energy transfer; visualization of bio-active small molecules Raman microscopy; (phospho-)proteomics and transcriptomics for mode-of-action studies, CRISPR/Cas9-based chemogenomic profiling in mammalian cells; predicting drug interactions using computational approaches; comparison of compound-induced profiles using high-content imaging or cancer cell line panels and web-based tools for polypharmacology prediction. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Cutting-edge and thorough, Systems Chemical Biology: Methods and Protocols is a valuable resource for novice or expert scientists and researchers trying to initiate or continue their chemical biology studies at a systems level.

Editors and Affiliations

  • Department of Chemical Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany

    Slava Ziegler, Herbert Waldmann

Bibliographic Information

  • Book Title: Systems Chemical Biology

  • Book Subtitle: Methods and Protocols

  • Editors: Slava Ziegler, Herbert Waldmann

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-8891-4

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC, part of Springer Nature 2019

  • Hardcover ISBN: 978-1-4939-8890-7Published: 06 December 2018

  • eBook ISBN: 978-1-4939-8891-4Published: 05 December 2018

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XI, 315

  • Number of Illustrations: 22 b/w illustrations, 43 illustrations in colour

  • Topics: Bioinformatics

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access