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  • © 2018

The Ubiquitin Proteasome System

Methods and Protocols

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 1844)

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Table of contents (25 protocols)

  1. Front Matter

    Pages i-xv
  2. Methods to Uncover the Mechanisms of Action for Enzymes that Assemble or Disassemble Poly-Ubiquitin Chains

    1. Front Matter

      Pages 1-1
    2. Characterization of RING-Between-RING E3 Ubiquitin Transfer Mechanisms

      • Katherine H. Reiter, Rachel E. Klevit
      Pages 3-17
    3. Single-Turnover RING/U-Box E3-Mediated Lysine Discharge Assays

      • Lori Buetow, Mads Gabrielsen, Danny T. Huang
      Pages 19-31
    4. Competition Assay for Measuring Deubiquitinating Enzyme Substrate Affinity

      • Michael T. Morgan, Cynthia Wolberger
      Pages 59-70
  3. Tools to Study Ubiquitylation

    1. Front Matter

      Pages 71-71
    2. Enzymatic Assembly of Ubiquitin Chains

      • Martin A. Michel, David Komander, Paul R. Elliott
      Pages 73-84
    3. Ubiquitin-Activated Interaction Traps (UBAITs): Tools for Capturing Protein-Protein Interactions

      • Hazel F. O’Connor, Caleb D. Swaim, Larissa A. Canadeo, Jon M. Huibregtse
      Pages 85-100
    4. Integrated Proteogenomic Approach for Identifying Degradation Motifs in Eukaryotic Cells

      • Yifat Geffen, Alon Appleboim, Richard G. Gardner, Tommer Ravid
      Pages 121-136
    5. E. coli-Based Selection and Expression Systems for Discovery, Characterization, and Purification of Ubiquitylated Proteins

      • Olga Levin-Kravets, Tal Keren-Kaplan, Ilan Attali, Itai Sharon, Neta Tanner, Dar Shapira et al.
      Pages 155-166
  4. Structural Approaches as Applied to Enzymes that Participate in the Ubiquitin Proteasome System

    1. Front Matter

      Pages 167-167
    2. Small-Angle X-Ray Scattering for the Study of Proteins in the Ubiquitin Pathway

      • Jean-François Trempe, Kalle Gehring
      Pages 197-208
  5. Methods to Study 26S Proteasome Function

    1. Front Matter

      Pages 217-217

About this book

“This volume explores numerous techniques used to study the ubiquitin proteasome system. The chapters in this book are organized into five parts and cover topics such as determining the mechanisms of action for E2s, E3s, and DUB enzymes; the latest advances to study the formation of poly-ubiquitin chains as well as their linkage types; the binding partners of proteins in the UPS; methods for structure determination by x-ray crystallography, cryo electron microscopy and SAXS; screening assays to select for degrons or modulators of E3s and DUBs; proteomics approaches in the ubiquitin field and methods to study 26S proteasome function. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.


Thorough and authoritative, The UbiquitinProteasome System: Methods and Protocols is a valuable resource for both experienced and novice scientists who are interested in expanding their knowledge in this field.


Editors and Affiliations

  • Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, Canada

    Thibault Mayor

  • Department of Chemistry and Biochemistry, University of Nevada Las Vegas, Las Vegas, USA

    Gary Kleiger

Bibliographic Information

  • Book Title: The Ubiquitin Proteasome System

  • Book Subtitle: Methods and Protocols

  • Editors: Thibault Mayor, Gary Kleiger

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-8706-1

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC, part of Springer Nature 2018

  • Hardcover ISBN: 978-1-4939-8705-4Published: 22 September 2018

  • Softcover ISBN: 978-1-4939-9371-0Published: 10 December 2019

  • eBook ISBN: 978-1-4939-8706-1Published: 21 September 2018

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XV, 413

  • Number of Illustrations: 29 b/w illustrations, 39 illustrations in colour

  • Topics: Protein Science

Buy it now

Buying options

eBook USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access