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  • © 2018

Genome Instability

Methods and Protocols

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 1672)

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Table of contents (43 protocols)

  1. Front Matter

    Pages i-xvi
  2. The A-Like Faker Assay for Measuring Yeast Chromosome III Stability

    • Carolina A. Novoa, J. Sidney Ang, Peter C. Stirling
    Pages 1-9
  3. Analyzing Genome Rearrangements in Saccharomyces cerevisiae

    • Anjana Srivatsan, Christopher D. Putnam, Richard D. Kolodner
    Pages 43-61
  4. High-Resolution Mapping of Modified DNA Nucleobases Using Excision Repair Enzymes

    • Monica Ransom, D. Suzi Bryan, Jay R. Hesselberth
    Pages 63-76
  5. Integrated Microarray-based Tools for Detection of Genomic DNA Damage and Repair Mechanisms

    • Patrick van Eijk, Yumin Teng, Mark R. Bennet, Katie E. Evans, James R. Powell, Richard M. Webster et al.
    Pages 77-99
  6. Study of UV-induced DNA Repair Factor Recruitment: Kinetics and Dynamics

    • Sarah Sertic, Stefania Roma, Paolo Plevani, Federico Lazzaro, Marco Muzi-Falconi
    Pages 101-105
  7. Inserting Site-Specific DNA Lesions into Whole Genomes

    • Vincent Pagès, Robert P. Fuchs
    Pages 107-118
  8. A qPCR-Based Protocol to Quantify DSB Resection

    • Matteo Ferrari, Shyam Twayana, Federica Marini, Achille Pellicioli
    Pages 119-129
  9. Alkaline Denaturing Southern Blot Analysis to Monitor Double-Strand Break Processing

    • Chiara Vittoria Colombo, Luca Menin, Michela Clerici
    Pages 131-145
  10. Single Molecule Analysis of Resection Tracks

    • Pablo Huertas, Andrés Cruz-García
    Pages 147-154
  11. Mapping DNA Breaks by Next-Generation Sequencing

    • Laura Baranello, Fedor Kouzine, Damian Wojtowicz, Kairong Cui, Keji Zhao, Teresa M. Przytycka et al.
    Pages 155-166
  12. Genome-Wide Profiling of DNA Double-Strand Breaks by the BLESS and BLISS Methods

    • Reza Mirzazadeh, Tomasz Kallas, Magda Bienko, Nicola Crosetto
    Pages 167-194
  13. DNA Replication Profiling Using Deep Sequencing

    • Xanita Saayman, Cristina Ramos-Pérez, Grant W. Brown
    Pages 195-207
  14. Analysis of Replicative Polymerase Usage by Ribonucleotide Incorporation

    • Andrea Keszthelyi, Izumi Miyabe, Katie Ptasińska, Yasukazu Daigaku, Karel Naiman, Antony M. Carr
    Pages 239-259

About this book

This volume presents forty-two methods and protocols to analyze diverse aspects of genome instability. Chapters detail mutagenesis and repair, methods to quantify and analyze the properties of DNA double-strand breaks, profile replication, replication proteins strand-specifically, genome instability, fluorescence microscopic techniques, and genomic and proteomic approaches. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and cutting-edge, Genome Instability: Methods and Protocols aims to provide a comprehensive resource for the discovery and analysis of the proteins and pathways that are critical for stable maintenance of the genome.

Editors and Affiliations

  • Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italy

    Marco Muzi-Falconi

  • Donnelly Centre and Department of Biochemistry, University of Toronto, Toronto, Canada

    Grant W Brown

Bibliographic Information

  • Book Title: Genome Instability

  • Book Subtitle: Methods and Protocols

  • Editors: Marco Muzi-Falconi, Grant W Brown

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-7306-4

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media LLC 2018

  • Hardcover ISBN: 978-1-4939-7305-7Published: 20 October 2017

  • Softcover ISBN: 978-1-4939-8447-3Published: 23 August 2018

  • eBook ISBN: 978-1-4939-7306-4Published: 17 October 2017

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XVI, 663

  • Number of Illustrations: 33 b/w illustrations, 100 illustrations in colour

  • Topics: Human Genetics

Buy it now

Buying options

eBook USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 199.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 199.00
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access