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RNA Detection

Methods and Protocols

Editors:

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 1649)

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Table of contents (32 protocols)

  1. Front Matter

    Pages i-xiv
  2. The Secret Life of RNA: Lessons from Emerging Methodologies

    • Caroline Medioni, Florence Besse
    Pages 1-28
  3. Axon-TRAP-RiboTag: Affinity Purification of Translated mRNAs from Neuronal Axons in Mouse In Vivo

    • Toshiaki Shigeoka, Jane Jung, Christine E. Holt, Hosung Jung
    Pages 85-94
  4. LCM-Seq: A Method for Spatial Transcriptomic Profiling Using Laser Capture Microdissection Coupled with PolyA-Based RNA Sequencing

    • Susanne Nichterwitz, Julio Aguila Benitez, Rein Hoogstraaten, Qiaolin Deng, Eva Hedlund
    Pages 95-110
  5. Spatial Transcriptomics: Constructing a Single-Cell Resolution Transcriptome-Wide Expression Atlas

    • Kaia Achim, Hernando Martínez Vergara, Jean-Baptiste Pettit
    Pages 111-125
  6. Single mRNA Molecule Detection in Drosophila

    • Shawn C. Little, Thomas Gregor
    Pages 127-142
  7. Detection and Automated Analysis of Single Transcripts at Subcellular Resolution in Zebrafish Embryos

    • L. Carine Stapel, Coleman Broaddus, Nadine L. Vastenhouw
    Pages 143-162
  8. Super-Resolution Single Molecule FISH at the Drosophila Neuromuscular Junction

    • Joshua S. Titlow, Lu Yang, Richard M. Parton, Ana Palanca, Ilan Davis
    Pages 163-175Open Access
  9. Padlock Probes to Detect Single Nucleotide Polymorphisms

    • Tomasz Krzywkowski, Mats Nilsson
    Pages 209-229
  10. Quantifying Gene Expression in Living Cells with Ratiometric Bimolecular Beacons

    • Yantao Yang, Mingming Chen, Christopher J. Krueger, Andrew Tsourkas, Antony K. Chen
    Pages 231-242
  11. Optimizing Molecular Beacons for Intracellular Analysis of RNA

    • Mingming Chen, Yantao Yang, Christopher J. Krueger, Antony K. Chen
    Pages 243-257
  12. In Vivo Visualization and Function Probing of Transport mRNPs Using Injected FIT Probes

    • Jasmine Chamiolo, Imre Gaspar, Anne Ephrussi, Oliver Seitz
    Pages 273-287
  13. Visualizing RNA in Live Bacterial Cells Using Fluorophore- and Quencher-Binding Aptamers

    • Murat Sunbul, Ankita Arora, Andres Jäschke
    Pages 289-304

About this book

This volume introduces different concepts and methods of detecting RNA in biological material in a variety of model systems. The chapters in this book discuss methods that will answer numerous biological questions that arise in the study of RNAs. Some of the topics covered in this book are single mRNA molecule detection in embryos and neurons; detection of mRNA and associated molecules by ISH-IEM on frozen sections; optimizing molecular beacons for intracellular analysis of RNA; imaging translation dynamics of single mRNA molecules in live cells; preparation of high-throughput sequencing libraries; and capturing RNA binding proteins in embryos and in cell-culture. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Cutting-edge and comprehensive, RNA Detection: Methods and Protocols is a valuable resource for novel and experiences scientist in the expanding field of RNAs.

Editors and Affiliations

  • Developmental Biology Unit, EMBL Heidelberg, Heidelberg, Germany

    Imre Gaspar

Bibliographic Information

  • Book Title: RNA Detection

  • Book Subtitle: Methods and Protocols

  • Editors: Imre Gaspar

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-7213-5

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media LLC 2018

  • Hardcover ISBN: 978-1-4939-7212-8Published: 15 November 2017

  • Softcover ISBN: 978-1-4939-8418-3Published: 30 August 2018

  • eBook ISBN: 978-1-4939-7213-5Published: 11 November 2017

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XIV, 492

  • Number of Illustrations: 16 b/w illustrations, 78 illustrations in colour

  • Topics: Human Genetics

Buy it now

Buying options

eBook USD 139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 179.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 179.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access