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Cohesin and Condensin

Methods and Protocols

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 1515)

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Table of contents (16 protocols)

  1. Front Matter

    Pages i-xii
  2. In Vitro and In Vivo Systems to Dissect Molecular Mechanisms of Cohesin Regulation in Mitosis and Meiosis

    1. Front Matter

      Pages 1-1
    2. A Sister Chromatid Cohesion Assay Using Xenopus Egg Extracts

      • Keishi Shintomi, Tatsuya Hirano
      Pages 3-21
    3. Biochemical and Functional Assays of Human Cohesin-Releasing Factor Wapl

      • Ge Zheng, Zhuqing Ouyang, Hongtao Yu
      Pages 37-53
    4. Detection of Cohesin SUMOylation In Vivo

      • Marcelino BermĂşdez-LĂłpez, Luis AragĂłn
      Pages 55-64
    5. Protein and Chromosome Analysis in Mammalian Meiocytes

      • Michelle Stevense, Rolf Jessberger, Attila TĂłth
      Pages 97-111
  3. The Roles of Cohesin in Gene Regulation, Chromatin Interactions, Ribosome Biogenesis, and DNA Repair

    1. Front Matter

      Pages 113-113
    2. Methods to Study the Atypical Roles of DNA Repair and SMC Proteins in Gene Silencing

      • Misty R. Peterson, Omar Hamdani, Rohinton T. Kamakaka
      Pages 151-176
    3. Zebrafish as a Model to Study Cohesin and Cohesinopathies

      • Akihiko Muto, Thomas F. Schilling
      Pages 177-196
    4. Analysis of Cohesin Function in Gene Regulation and Chromatin Organization in Interphase

      • Preksha Gupta, Thais Lavagnolli, Hegias Mira-Bontenbal, Matthias Merkenschlager
      Pages 197-216
    5. The Use of Laser Microirradiation to Investigate the Roles of Cohesins in DNA Repair

      • Xiangduo Kong, Alexander R. Ball Jr., Kyoko Yokomori
      Pages 227-242
  4. Dissection of Condensin Function in Mitotic Chromosome Condensation and Gene Regulation

    1. Front Matter

      Pages 243-243
    2. A Protocol for Measuring Mitotic Chromosome Condensation Quantitatively in Fission Yeast Cells

      • Christoph Schiklenk, Boryana Petrova, Christian H. Haering
      Pages 245-255
    3. ChIP-seq Analysis of Condensin Complex in Cultured Mammalian Cells

      • Toyonori Sakata, Katsuhiko Shirahige, Takashi Sutani
      Pages 257-271

About this book

The volume provides comprehensive, state-of-the-art experimental techniques that are now available to dissect the molecular mechanisms of regulation and function of cohesin and the related factor condensin in vitro and in vivo across different model organisms, as well as in human cells. Cohesin and Condensin: Methods and Protocols is divided into three parts: Part I explores various in vitro and in vivo systems used to study the fundamental mechanism of cohesin regulation in mitosis and meiosis; Part II summarizes experimental systems in a variety of organisms that are used to address interphase functions of cohesin and Nipbl in gene regulation and chromatin interaction, ribosome biogenesis and DNA repair, which contribute significantly to cohesion-associated disorders; Part III covers related condensin complex and describes techniques to study its role in mitosis and interphase. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Cutting-edge and thorough, Cohesin and Condensin: Methods and Protocols is a valuable resource for diverse audiences with interests in the relationship between chromatin organization and genomic functions.

Editors and Affiliations

  • Department of Biological Chemistry, School of Medicine University of California— Irvine, Irvine, USA

    Kyoko Yokomori

  • Laboratory of Genome Structure and Function Research Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences The University of Tokyo, Tokyo, Japan

    Katsuhiko Shirahige

Bibliographic Information

  • Book Title: Cohesin and Condensin

  • Book Subtitle: Methods and Protocols

  • Editors: Kyoko Yokomori, Katsuhiko Shirahige

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-6545-8

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media New York 2017

  • Hardcover ISBN: 978-1-4939-6543-4Published: 29 October 2016

  • Softcover ISBN: 978-1-4939-8232-5Published: 06 July 2018

  • eBook ISBN: 978-1-4939-6545-8Published: 28 October 2016

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XII, 276

  • Number of Illustrations: 8 b/w illustrations, 33 illustrations in colour

  • Topics: Cell Biology

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access