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  • © 2015

Nuclear Bodies and Noncoding RNAs

Methods and Protocols

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 1262)

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Table of contents (21 protocols)

  1. Front Matter

    Pages i-xii
  2. Imaging of Noncoding RNAs and Nuclear Bodies

    1. Front Matter

      Pages 1-1
    2. Visualization of lncRNA by Single-Molecule Fluorescence In Situ Hybridization

      • Margaret Dunagin, Moran N. Cabili, John Rinn, Arjun Raj
      Pages 3-19
    3. Super-Resolution Imaging of Nuclear Bodies by STED Microscopy

      • Yasushi Okada, Shinichi Nakagawa
      Pages 21-35
    4. Time-Lapse Imaging of Nuclear Bodies

      • Saskia Hutten, Samuel Swift, Angus I. Lamond
      Pages 55-67
    5. Live CLEM Imaging to Analyze Nuclear Structures at High Resolution

      • Tokuko Haraguchi, Hiroko Osakada, Takako Koujin
      Pages 89-103
    6. Ultrastructural Analysis of Nuclear Bodies Using Electron Microscopy

      • Sylvie Souquere, Gérard Pierron
      Pages 105-118
    7. Analyses of Nuclear Proteins and Nucleic Acid Structures Using Atomic Force Microscopy

      • Jamie L. Gilmore, Aiko Yoshida, Hirohide Takahashi, Katashi Deguchi, Toshiro Kobori, Emilie Louvet et al.
      Pages 119-153
  3. Biochemical Analysis of Noncoding RNAs and Nuclear Bodies

    1. Front Matter

      Pages 165-165
    2. RNA Antisense Purification (RAP) for Mapping RNA Interactions with Chromatin

      • Jesse Engreitz, Eric S. Lander, Mitchell Guttman
      Pages 183-197
    3. Extracting, Enriching, and Identifying Nuclear Body Sub-Complexes Using Label-Based Quantitative Mass Spectrometry

      • Archa Fox, Virja Mehta, Severine Boulon, Laura Trinkle-Mulcahy
      Pages 215-238
    4. Studying RNA-Binding Protein Interactions with Target mRNAs in Eukaryotic Cells: Native Ribonucleoprotein Immunoprecipitation (RIP) Assays

      • Joseph A. Cozzitorto, Masaya Jimbo, Saswati Chand, Fernando Blanco, Shruti Lal, Melissa Gilbert et al.
      Pages 239-246
    5. Cross-Linking and Immunoprecipitation of Nuclear RNA-Binding Proteins

      • Quan Li, Yuri Uemura, Yukio Kawahara
      Pages 247-263
  4. Cell and Molecular Biological Approach Toward the Analysis of Noncoding RNAs and Nuclear Bodies

    1. Front Matter

      Pages 275-275

About this book

This volume focuses on cytological, biochemical, and molecular biological methods to identify and examine the function of each nuclear body, with an emphasis on the analysis of long non-coding RNAs. Chapters focus on exploring recent studies that reveal how certain long non protein-coding RNAs accumulate in specific nuclear bodies and regulate the function of the bodies by serving as architectural components or controlling the dynamics of associating protein components. Written in the highly successful Methods of Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Nuclear Bodies and Noncoding RNAs: Methods and Protocols serves as a guideline for further study into the sophisticated regulation of gene expression.

Editors and Affiliations

  • RNA Biology Laboratory, RIKEN, Saitama, Japan

    Shinichi Nakagawa

  • Institute for Genetic Medicine, Hokkaido University, Sapporo, Japan

    Tetsuro Hirose

Bibliographic Information

  • Book Title: Nuclear Bodies and Noncoding RNAs

  • Book Subtitle: Methods and Protocols

  • Editors: Shinichi Nakagawa, Tetsuro Hirose

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-2253-6

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media New York 2015

  • Hardcover ISBN: 978-1-4939-2252-9Published: 02 January 2015

  • Softcover ISBN: 978-1-4939-5549-7Published: 05 October 2016

  • eBook ISBN: 978-1-4939-2253-6Published: 02 January 2015

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XII, 351

  • Number of Illustrations: 24 b/w illustrations, 46 illustrations in colour

  • Topics: Human Genetics, Gene Function

Buy it now

Buying options

eBook USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 54.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access