Genome-Wide Prediction and Analysis of Protein-Protein Functional Linkages in Bacteria

1. Front Matter

   Pages i-x

   PDF

2. Introduction

   • Vijaykumar Yogesh Muley, Vishal Acharya

   Pages 1-2

3. From Genomes to Protein Functions

   • Vijaykumar Yogesh Muley, Vishal Acharya

   Pages 3-17

4. Co-Evolutionary Signals Within Genome Sequences Reflect Functional Dependence of Proteins

   • Vijaykumar Yogesh Muley, Vishal Acharya

   Pages 19-32

5. Chromosomal Proximity of Genes as an Indicator of Functional Linkage

   • Vijaykumar Yogesh Muley, Vishal Acharya

   Pages 33-42

6. Analyses of Complex Genome-Scale Biological Networks

   • Vijaykumar Yogesh Muley, Vishal Acharya

   Pages 43-55

7. Applications of Protein Interaction Networks

   • Vijaykumar Yogesh Muley, Vishal Acharya

   Pages 57-60

​​ ​Using genome sequencing, one can predict possible interactions among proteins. There are very few titles that focus on protein-protein interaction predictions in bacteria. The authors will describe these methods and further highlight its use to predict various biological pathways and complexity of the cellular response to various environmental conditions. Topics include analysis of complex genome-scale protein-protein interaction networks, effects of reference genome selection on prediction accuracy, and genome sequence templates to predict protein function.

• bioinformatics
• biology
• genomics
• protein
• systems
• Systems Biology
• Proteomics

• Indian Institute of Science Education an, Center of Excellence in Epigenetics, Pashan, India

  Vijaykumar Yogesh Muley

• CSIR-Inst of Himalayan Bioresource Techn, Biotechnology Division, Palampur, India

  Vishal Acharya

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