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  • © 2011

Multiscale Approaches to Protein Modeling

  • This book contains comprehensive reviews of the most advanced multiscale modeling methods in protein structure prediction The presented approaches span a wide range of the levels of coarse-grained representations This can be used as both a reference book for those who just are beginning with biomacromolecular modeling, and also as a source of more detailed information for those who are already experts in the field

  • Includes supplementary material: sn.pub/extras

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Table of contents (14 chapters)

  1. Front Matter

    Pages i-xii
  2. Lattice Polymers and Protein Models

    • Andrzej Kolinski
    Pages 1-20
  3. Multiscale Protein and Peptide Docking

    • Mateusz Kurcinski, MichaÅ‚ Jamroz, Andrzej Kolinski
    Pages 21-33
  4. Coarse-Grained Models of Proteins: Theory and Applications

    • Cezary Czaplewski, Adam Liwo, Mariusz Makowski, StanisÅ‚aw OÅ‚dziej, Harold A. Scheraga
    Pages 35-83
  5. Conformational Sampling in Structure Prediction and Refinement with Atomistic and Coarse-Grained Models

    • Michael Feig, Srinivasa M. Gopal, Kanagasabai Vadivel, Andrew Stumpff-Kane
    Pages 85-109
  6. Effective All-Atom Potentials for Proteins

    • Anders Irbäck, Sandipan Mohanty
    Pages 111-126
  7. Statistical Contact Potentials in Protein Coarse-Grained Modeling: From Pair to Multi-body Potentials

    • Sumudu P. Leelananda, Yaping Feng, Pawel Gniewek, Andrzej Kloczkowski, Robert L. Jernigan
    Pages 127-157
  8. Bridging the Atomic and Coarse-Grained Descriptions of Collective Motions in Proteins

    • Vincenzo Carnevale, Cristian Micheletti, Francesco Pontiggia, Raffaello Potestio
    Pages 159-178
  9. Genome-Wide Protein Structure Prediction

    • Srayanta Mukherjee, Andras Szilagyi, Ambrish Roy, Yang Zhang
    Pages 255-279
  10. Multiscale Approach to Protein Folding Dynamics

    • Sebastian Kmiecik, MichaÅ‚ Jamroz, Andrzej Kolinski
    Pages 281-293
  11. Error Estimation of Template-Based Protein Structure Models

    • Daisuke Kihara, Yifeng David Yang, Hao Chen
    Pages 295-314
  12. Evaluation of Protein Structure Prediction Methods: Issues and Strategies

    • Anna Tramontano, Domenico Cozzetto
    Pages 315-339
  13. Back Matter

    Pages 341-355

About this book

The book gives a comprehensive review of the most advanced multiscale methods for protein structure prediction, computational studies of protein dynamics, folding mechanisms and macromolecular interactions. It approaches span a wide range of the levels of coarse-grained representations, various sampling techniques and variety of applications to biomedical and biophysical problems. This book is intended to be used as a reference book for those who are just beginning their adventure with biomacromolecular modeling but also as a valuable source of detailed information for those who are already experts in the field of biomacromolecular modeling and in related areas of computational biology or biophysics.

Editors and Affiliations

  • Dept. Chemistry, University of Warsaw, Warszawa, Poland

    Andrzej Kolinski

Bibliographic Information

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access