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  • © 2014

A Systems Theoretic Approach to Systems and Synthetic Biology I: Models and System Characterizations

  • New rigorous methods to obtain better predictive models of biological networks
  • New results on the limits of performance in biological networks
  • Includes novel applications of in vitro synthetic biology in nanotechnology
  • Includes supplementary material: sn.pub/extras

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Table of contents (12 chapters)

  1. Front Matter

    Pages i-xviii
  2. Mathematical Analysis

    1. Front Matter

      Pages 1-1
    2. On the Mathematics of the Law of Mass Action

      • Leonard Adleman, Manoj Gopalkrishnan, Ming-Deh Huang, Pablo Moisset, Dustin Reishus
      Pages 3-46
    3. Structural Analysis of Biological Networks

      • Franco Blanchini, Elisa Franco
      Pages 47-71
    4. Guaranteeing Spatial Uniformity in Reaction-Diffusion Systems Using Weighted \(L^2\) Norm Contractions

      • Zahra Aminzare, Yusef Shafi, Murat Arcak, Eduardo D. Sontag
      Pages 73-101
    5. Robust Tunable Transcriptional Oscillators Using Dynamic Inversion

      • Vishwesh V. Kulkarni, Aditya A. Paranjape, Soon-Jo Chung
      Pages 103-119
    6. Towards the Modular Decomposition of the Metabolic Network

      • Anne Goelzer, Vincent Fromion
      Pages 121-152
    7. An Optimal Control Approach to Seizure Detection in Drug-Resistant Epilepsy

      • Sabato Santaniello, Samuel P. Burns, William S. Anderson, Sridevi V. Sarma
      Pages 153-178
  3. Biological Network Modelling

    1. Front Matter

      Pages 179-179
    2. Model Reduction of Genetic-Metabolic Networks via Time Scale Separation

      • Juan Kuntz, Diego Oyarzún, Guy-Bart Stan
      Pages 181-210
    3. Networks, Metrics, and Systems Biology

      • Soumen Roy
      Pages 211-225
    4. Understanding and Predicting Biological Networks Using Linear System Identification

      • Alberto Carignano, Ye Yuan, Neil Dalchau, Alex A. R. Webb, Jorge Gonçalves
      Pages 227-253
    5. Model Checking in Biology

      • Jasmin Fisher, Nir Piterman
      Pages 255-279
    6. Computational Design of Informative Experiments in Systems Biology

      • Alberto Giovanni Busetto, Mikael SunnÃ¥ker, Joachim M. Buhmann
      Pages 281-305
  4. Back Matter

    Pages 327-332

About this book

The complexity of biological systems has intrigued scientists from many disciplines and has given birth to the highly influential field of systems biology wherein a wide array of mathematical techniques, such as flux balance analysis, and technology platforms, such as next generation sequencing, is used to understand, elucidate, and predict the functions of complex biological systems.  More recently, the field of synthetic biology, i.e., de novo engineering of biological systems, has emerged. Scientists from various fields are focusing on how to render this engineering process more predictable, reliable, scalable, affordable, and easy. 

Systems and control theory is a branch of engineering and applied sciences that rigorously deals with the complexities and uncertainties of interconnected systems with the objective of characterising fundamental systemic properties such as stability, robustness, communication capacity, and other performance metrics. Systems and control theory also strives to offer concepts and methods that facilitate the design of systems with rigorous guarantees on these properties. Over the last 100 years, it has made stellar theoretical and technological contributions in diverse fields such as aerospace, telecommunication, storage, automotive, power systems, and others. Can it have, or evolve to have, a similar impact in biology? The chapters in this book demonstrate that, indeed, systems and control theoretic concepts and techniques can have a significant impact in systems and synthetic biology. 

Volume I provides a panoramic view that illustrates the potential of such mathematical methods in systems and synthetic biology.  Recent advances in systems and synthetic biology have clearly demonstrated the benefits of a rigorous and systematic approach rooted in the principles of systems and control theory - not only does it lead to exciting insights and discoveries but it also reduces theinordinately lengthy trial-and-error process of wet-lab experimentation, thereby facilitating significant savings in human and financial resources.  In Volume I, some of the leading researchers in the field of systems and synthetic biology demonstrate how systems and control theoretic concepts and techniques can be useful, or should evolve to be useful, in order to understand how biological systems function. 

As the eminent computer scientist Donald Knuth put it, "biology easily has 500 years of exciting problems to work on". This edited book presents but a small fraction of those for the benefit of (1) systems and control theorists interested in molecular and cellular biology and (2) biologists interested in rigorous modelling, analysis and control of biological systems.

Editors and Affiliations

  • Electrical and Computer Engineering, University of Minnesota, Minneapolis, USA

    Vishwesh V. Kulkarni

  • Bioengineering, Imperial College, London, United Kingdom

    Guy-Bart Stan

  • Biotechnology, Indian Institute of Technology Madras, Chennai, India

    Karthik Raman

Bibliographic Information

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access