Skip to main content
SpringerLink
Log in

Algorithms in Bioinformatics

14th International Workshop, WABI 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings

  • Conference proceedings
  • © 2014

Overview

Editors:
  1. Dan Brown

    1. David R. Cheriton School of Computer Science, University of Waterloo, Canada

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

  2. Burkhard Morgenstern

    1. Institute of Microbiology and Genetics, Department of Bioinformatics, University of Göttingen, Germany, Göttingen, Germany

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 8701)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: WABI 2014.

This is a preview of subscription content, log in via an institution to check access.

Access this book

Log in via an institution
eBook USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access

Licence this eBook for your library

Institutional subscriptions

Table of contents (27 papers)

  1. Front Matter

    Download chapter PDF

  2. QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering

    • Matteo Comin, Andrea Leoni, Michele Schimd
    Pages 1-13

  3. Improved Approximation for the Maximum Duo-Preservation String Mapping Problem

    • Nicolas Boria, Adam Kurpisz, Samuli Leppänen, Monaldo Mastrolilli
    Pages 14-25

  4. A Faster 1.375-Approximation Algorithm for Sorting by Transpositions

    • Luís Felipe I. Cunha, Luis Antonio B. Kowada, Rodrigo de A. Hausen, Celina M. H. de Figueiredo
    Pages 26-37

  5. A Generalized Cost Model for DCJ-Indel Sorting

    • Phillip E. C. Compeau
    Pages 38-51

  6. Efficient Local Alignment Discovery amongst Noisy Long Reads

    • Gene Myers
    Pages 52-67

  7. Efficient Indexed Alignment of Contigs to Optical Maps

    • Martin D. Muggli, Simon J. Puglisi, Christina Boucher
    Pages 68-81

  8. Navigating in a Sea of Repeats in RNA-seq without Drowning

    • Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
    Pages 82-96

  9. Linearization of Median Genomes under DCJ

    • Shuai Jiang, Max A. Alekseyev
    Pages 97-106

  10. An LP-Rounding Algorithm for Degenerate Primer Design

    • Yu-Ting Huang, Marek Chrobak
    Pages 107-121

  11. GAML: Genome Assembly by Maximum Likelihood

    • Vladimír Boža, Broňa Brejová, Tomáš Vinař
    Pages 122-134

  12. A Common Framework for Linear and Cyclic Multiple Sequence Alignment Problems

    • Sebastian Will, Peter F. Stadler
    Pages 135-147

  13. Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences

    • Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
    Pages 148-160

  14. Estimating Evolutionary Distances from Spaced-Word Matches

    • Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege, Chris-André Leimeister
    Pages 161-173

  15. On the Family-Free DCJ Distance

    • Fábio V. Martinez, Pedro Feijão, Marília D. V. Braga, Jens Stoye
    Pages 174-186

  16. New Algorithms for Computing Phylogenetic Biodiversity

    • Constantinos Tsirogiannis, Brody Sandel, Adrija Kalvisa
    Pages 187-203

  17. The Divisible Load Balance Problem and Its Application to Phylogenetic Inference

    • Kassian Kobert, Tomáš Flouri, Andre Aberer, Alexandros Stamatakis
    Pages 204-216

  18. Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting Performance and Quality

    • Kerstin Scheubert, Franziska Hufsky, Sebastian Böcker
    Pages 217-231

  19. An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data

    • Dominik Kopczynski, Sven Rahmann
    Pages 232-246

  20. Best-Fit in Linear Time for Non-generative Population Simulation

    • Niina Haiminen, Claude Lebreton, Laxmi Parida
    Pages 247-262
Back to top

Other volumes

  1. Algorithms in Bioinformatics

Keywords

About this book

This book constitutes the refereed proceedings of the 14th International Workshop on Algorithms in Bioinformatics, WABI 2014, held in Wroclaw, Poland, in September 2014. WABI 2014 was one of seven conferences that were organized as part of ALGO 2014. WABI is an annual conference series on all aspects of algorithms and data structure in molecular biology, genomics and phylogeny data analysis. The 26 full papers presented together with a short abstract were carefully reviewed and selected from 61 submissions. The selected papers cover a wide range of topics from sequence and genome analysis through phylogeny reconstruction and networks to mass spectrometry data analysis.

Editors and Affiliations

  • David R. Cheriton School of Computer Science, University of Waterloo, Canada

    Dan Brown

  • Institute of Microbiology and Genetics, Department of Bioinformatics, University of Göttingen, Germany, Göttingen, Germany

    Burkhard Morgenstern

Bibliographic Information

Publish with us

Policies and ethics

Back to top

Search

Navigation