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Data Integration in the Life Sciences

9th International Conference, DILS 2013, Montreal, Canada, July 11-12, 2013, Proceedings

  • Conference proceedings
  • © 2013

Overview

Editors:
  1. Christopher J. O. Baker

    1. Department of Computer Science and Applied Statistics, University of New Brunswick, Saint John, Canada

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  2. Greg Butler

    1. Department of Computer Science, Concordia University, Montreal, Canada

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  3. Igor Jurisica

    1. Ontario Cancer Institute, University of Toronto, Toronto, Canada

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 7970)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: DILS 2013.

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Table of contents (11 papers)

  1. Front Matter

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  2. Changing the Model in Pharma and Healthcare – Can We Afford to Wait Any Longer?

    • Erich Alfred Gombocz
    Pages 1-22

  3. Ibidas: Querying Flexible Data Structures to Explore Heterogeneous Bioinformatics Data

    • Marc Hulsman, Jan J. Bot, Arjen P. de Vries, Marcel J. T. Reinders
    Pages 23-37

  4. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data

    • Amir H. Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth et al.
    Pages 38-45

  5. OmixAnalyzer – A Web-Based System for Management and Analysis of High-Throughput Omics Data Sets

    • Thomas Stoltmann, Karin Zimmermann, André Koschmieder, Ulf Leser
    Pages 46-53

  6. The RDF Pipeline Framework: Automating Distributed, Dependency-Driven Data Pipelines

    • David Booth
    Pages 54-68

  7. Towards Interoperable BioNLP Semantic Web Services Using the SADI Framework

    • Ahmad C. Bukhari, Artjom Klein, Christopher J. O. Baker
    Pages 69-80

  8. Optimizing Similarity Computations for Ontology Matching - Experiences from GOMMA

    • Michael Hartung, Lars Kolb, Anika Groß, Erhard Rahm
    Pages 81-89

  9. Semi-automatic Adaptation of Mappings between Life Science Ontologies

    • Anika Groß, Julio Cesar Dos Reis, Michael Hartung, Cédric Pruski, Erhard Rahm
    Pages 90-104

  10. Next Generation Cancer Data Discovery, Access, and Integration Using Prizms and Nanopublications

    • Jamie P. McCusker, Timothy Lebo, Michael Krauthammer, Deborah L. McGuinness
    Pages 105-112

  11. Putting It All Together: The Design of a Pipeline for Genome-Wide Functional Annotation of Fungi in the Modern Era of “-Omics” Data and Systems Biology

    • Greg Butler
    Pages 113-127

  12. Mining Anti-coagulant Drug-Drug Interactions from Electronic Health Records Using Linked Data

    • Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
    Pages 128-140

  13. Back Matter

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Other volumes

  1. Data Integration in the Life Sciences

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About this book

This book constitutes the refereed proceedings of the 9th International Conference on Data Integration in the Life Sciences, DILS 2013, held in Montreal, QC, Canada, in July 2013. The 10 revised papers included in this volume were carefully reviewed and selected from 23 submissions. The papers cover a range of important topics such as algorithms for ontology matching, interoperable frameworks for text mining using semantic web services, pipelines for genome-wide functional annotation, automation of pipelines providing data discovery and access to distributed resources, knowledge-driven querying-answer systems, prizms, nanopublications, electronic health records and linked data.

Editors and Affiliations

  • Department of Computer Science and Applied Statistics, University of New Brunswick, Saint John, Canada

    Christopher J. O. Baker

  • Department of Computer Science, Concordia University, Montreal, Canada

    Greg Butler

  • Ontario Cancer Institute, University of Toronto, Toronto, Canada

    Igor Jurisica

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