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Data Integration in the Life Sciences

8th International Conference, DILS 2012, College Park, MD, USA, June 28-29, 2012, Proceedings

  • Conference proceedings
  • © 2012

Overview

Editors:
  1. Olivier Bodenreider

    1. US National Library of Medicine, National Institutes of Health, Bethesda, USA

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  2. Bastien Rance

    1. US National Library of Medicine, National Institutes of Health, Bethesda, USA

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    You can also search for this editor in PubMed   Google Scholar

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 7348)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

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Conference proceedings info: DILS 2012.

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Table of contents (11 papers)

  1. Front Matter

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  2. Foundations of Data Integration

    1. Entrez: The NCBI Search and Discovery Engine

      • James M. Ostell
      Pages 1-4

    2. InterOnto – Ranking Inter-Ontology Links

      • Silke Trißl, Philipp Hussels, Ulf Leser
      Pages 5-20

    3. Finding Cross Genome Patterns in Annotation Graphs

      • Joseph Benik, Caren Chang, Louiqa Raschid, Maria-Esther Vidal, Guillermo Palma, Andreas Thor
      Pages 21-36

    4. Pay-as-You-Go Ranking of Schema Mappings Using Query Logs

      • Ruhaila Maskat, Norman W. Paton, Suzanne M. Embury
      Pages 37-52

  3. New Paradigms for Data Integration

    1. Combining Structured and Unstructured Knowledge Sources for Question Answering in Watson

      • Ken Barker
      Pages 53-55

    2. Cancer Data Integration and Querying with GeneTegra

      • E. Patrick Shironoshita, Yves R. Jean-Mary, Ray M. Bradley, Patricia Buendia, Mansur R. Kabuka
      Pages 56-70

    3. Integrating Large, Disparate Biomedical Ontologies to Boost Organ Development Network Connectivity

      • Chimezie Ogbuji, Rong Xu
      Pages 71-82

    4. Validating Candidate Gene-Mutation Relations in MEDLINE Abstracts via Crowdsourcing

      • John D. Burger, Emily Doughty, Sam Bayer, David Tresner-Kirsch, Ben Wellner, John Aberdeen et al.
      Pages 83-91

  4. Integrating Clinical Data

    1. The Biomedical Translational Research Information System: Clinical Data Integration at the National Institutes of Health

      • James J. Cimino
      Pages 92-92

    2. ONCO-i2b2: Improve Patients Selection through Case-Based Information Retrieval Techniques

      • Daniele Segagni, Matteo Gabetta, Valentina Tibollo, Alberto Zambelli, Silvia G. Priori, Riccardo Bellazzi
      Pages 93-99

    3. Syntactic-Semantic Frames for Clinical Cohort Identification Queries

      • Dina Demner-Fushman, Swapna Abhyankar
      Pages 100-112

  5. Back Matter

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  1. Data Integration in the Life Sciences

Keywords

About this book

This book constitutes the refereed proceedings of the 8th International Conference on Data Integration in the Life Sciences, DILS 2012, held in College Park, MD, USA, on June 28-29, 2012. The 11 revised papers included in this volume were carefully reviewed and selected. The papers cover the following topics: foundations of data integration, new paradigms for data integration, and integrating clinical data.

Editors and Affiliations

  • US National Library of Medicine, National Institutes of Health, Bethesda, USA

    Olivier Bodenreider, Bastien Rance

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