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Combinatorial Pattern Matching

15th Annual Symposium, CPM 2004, Istanbul, Turkey, July 5-7, 2004, Proceedings

  • Conference proceedings
  • © 2004

Overview

Editors:
  1. Suleyman Cenk Sahinalp

    1. School of Computing Science, Simon Fraser University, Burnaby, Canada

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    You can also search for this editor in PubMed   Google Scholar

  2. S. Muthukrishnan

    1. Google Inc., New York, NY

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    You can also search for this editor in PubMed   Google Scholar

  3. Ugur Dogrusoz

    1. Tom Sawyer Software, Oakland, USA

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 3109)

Included in the following conference series:

Conference proceedings info: CPM 2004.

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Table of contents (36 papers)

  1. Front Matter

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  2. Sorting by Reversals in Subquadratic Time

    • Eric Tannier, Marie-France Sagot
    Pages 1-13

  3. Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs

    • Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, Itsik Pe’er
    Pages 14-31

  4. Sorting by Length-Weighted Reversals: Dealing with Signs and Circularity

    • Firas Swidan, Michael A. Bender, Dongdong Ge, Simai He, Haodong Hu, Ron Y. Pinter
    Pages 32-46

  5. Optimizing Multiple Spaced Seeds for Homology Search

    • Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma
    Pages 47-58

  6. Approximate Labelled Subtree Homeomorphism

    • Ron Y. Pinter, Oleg Rokhlenko, Dekel Tsur, Michal Ziv-Ukelson
    Pages 59-73

  7. On the Average Sequence Complexity

    • Svante Janson, Stefano Lonardi, Wojciech Szpankowski
    Pages 74-88

  8. Approximate Point Set Pattern Matching on Sequences and Planes

    • Tomoaki Suga, Shinichi Shimozono
    Pages 89-101

  9. Finding Biclusters by Random Projections

    • Stefano Lonardi, Wojciech Szpankowski, Qiaofeng Yang
    Pages 102-116

  10. Real-Time String Matching in Sublinear Space

    • Leszek Gąsieniec, Roman Kolpakov
    Pages 117-129

  11. On the k-Closest Substring and k-Consensus Pattern Problems

    • Yishan Jiao, Jingyi Xu, Ming Li
    Pages 130-144

  12. A Trie-Based Approach for Compacting Automata

    • Maxime Crochemore, Chiara Epifanio, Roberto Grossi, Filippo Mignosi
    Pages 145-158

  13. A Simple Optimal Representation for Balanced Parentheses

    • Richard F. Geary, Naila Rahman, Rajeev Raman, Venkatesh Raman
    Pages 159-172

  14. Two Algorithms for LCS Consecutive Suffix Alignment

    • Gad M. Landau, Eugene Myers, Michal Ziv-Ukelson
    Pages 173-193

  15. Efficient Algorithms for Finding Submasses in Weighted Strings

    • Nikhil Bansal, Mark Cieliebak, Zsuzsanna Lipták
    Pages 194-204

  16. Maximum Agreement and Compatible Supertrees

    • Vincent Berry, François Nicolas
    Pages 205-219

  17. Polynomial-Time Algorithms for the Ordered Maximum Agreement Subtree Problem

    • Anders Dessmark, Jesper Jansson, Andrzej Lingas, Eva-Marta Lundell
    Pages 220-229

  18. Small Phylogeny Problem: Character Evolution Trees

    • Arvind Gupta, Ján Maňuch, Ladislav Stacho, Chenchen Zhu
    Pages 230-243

  19. The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices

    • Piotr Berman, Bhaskar DasGupta, Dhruv Mubayi, Robert Sloan, György Turán, Yi Zhang
    Pages 244-253

  20. A Computational Model for RNA Multiple Structural Alignment

    • Eugene Davydov, Serafim Batzoglou
    Pages 254-269
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  1. Combinatorial Pattern Matching

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Editors and Affiliations

  • School of Computing Science, Simon Fraser University, Burnaby, Canada

    Suleyman Cenk Sahinalp

  • Google Inc., New York, NY

    S. Muthukrishnan

  • Tom Sawyer Software, Oakland, USA

    Ugur Dogrusoz

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