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  • © 2016

Nonribosomal Peptide and Polyketide Biosynthesis

Methods and Protocols

  • Includes cutting-edge methods and protocols for NPRS and PKS research
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 1401)

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Table of contents (17 protocols)

  1. Front Matter

    Pages i-xi
  2. Background and Overview

    1. Front Matter

      Pages 1-1
    2. Structural Biology of Nonribosomal Peptide Synthetases

      • Bradley R. Miller, Andrew M. Gulick
      Pages 3-29
    3. The Assembly Line Enzymology of Polyketide Biosynthesis

      • Marisa Till, Paul R. Race
      Pages 31-49
  3. In Vitro Methods

    1. Front Matter

      Pages 51-51
    2. Colorimetric Detection of the Adenylation Activity in Nonribosomal Peptide Synthetases

      • Chitose Maruyama, Haruka Niikura, Masahiro Takakuwa, Hajime Katano, Yoshimitsu Hamano
      Pages 77-84
    3. The Continuing Development of E. coli as a Heterologous Host for Complex Natural Product Biosynthesis

      • Haoran Zhang, Lei Fang, Marcia S. Osburne, Blaine A. Pfeifer
      Pages 121-134
    4. Enhancing Nonribosomal Peptide Biosynthesis in Filamentous Fungi

      • Alexandra A. Soukup, Nancy P. Keller, Philipp Wiemann
      Pages 149-160
    5. Secondary Metabolic Pathway-Targeted Metabolomics

      • Maria I. Vizcaino, Jason M. Crawford
      Pages 175-195
  4. Bioinformatic Methods

    1. Front Matter

      Pages 197-197
    2. Bioinformatics Tools for the Discovery of New Nonribosomal Peptides

      • Valérie Leclère, Tilmann Weber, Philippe Jacques, Maude Pupin
      Pages 209-232
    3. The Use of ClusterMine360 for the Analysis of Polyketide and Nonribosomal Peptide Biosynthetic Pathways

      • Nicolas Tremblay, Patrick Hill, Kyle R. Conway, Christopher N. Boddy
      Pages 233-252
    4. Alignment-Free Methods for the Detection and Specificity Prediction of Adenylation Domains

      • Guillermin Agüero-Chapin, Gisselle Pérez-Machado, Aminael Sánchez-Rodríguez, Miguel Machado Santos, Agostinho Antunes
      Pages 253-272

About this book

This volume presents an overview of nonribosomal peptide synthetase (NRPS) and polyketide synthase (PKS) structure and function.  It then continues with methods for the analysis of these pathways including conventional enzymological assays, contemporary mass spectrometric analysis techniques, specialized molecular biological approaches applicable to NRPSs and PKSs, and small molecule analysis tools tailored to this very special class of natural products, and concludes by examining bioinformatics tools for the analysis of these enzymes, pathways, and molecules. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Nonribosomal Peptide and Polyketide Biosynthesis: Methods and Protocols serves as a valuable reference for those experienced in studying NRPS and PKS enzymes, pathways, and natural products as well as a gateway for those just entering the field.

Editors and Affiliations

  • Donald Danforth Plant Science Center, Saint Louis, USA

    Bradley S. Evans

Bibliographic Information

  • Book Title: Nonribosomal Peptide and Polyketide Biosynthesis

  • Book Subtitle: Methods and Protocols

  • Editors: Bradley S. Evans

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-3375-4

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media New York 2016

  • Hardcover ISBN: 978-1-4939-3373-0Published: 02 February 2016

  • Softcover ISBN: 978-1-4939-8034-5Published: 31 March 2018

  • eBook ISBN: 978-1-4939-3375-4Published: 02 February 2016

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XI, 281

  • Number of Illustrations: 31 b/w illustrations, 49 illustrations in colour

  • Topics: Protein Science, Enzymology

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access