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Comparative Genomics

15th International Workshop, RECOMB CG 2017, Barcelona, Spain, October 4-6, 2017, Proceedings

  • Conference proceedings
  • © 2017

Overview

Editors:
  1. Joao Meidanis

    1. University of Campinas, Campinas, Brazil

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    You can also search for this editor in PubMed   Google Scholar

  2. Luay Nakhleh

    1. Rice University, Houston, USA

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 10562)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RECOMB-CG 2017.

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Table of contents (16 papers)

  1. Front Matter

    Pages I-VIII
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  2. The Similarity Distribution of Paralogous Gene Pairs Created by Recurrent Alternation of Polyploidization and Fractionation

    • Yue Zhang, David Sankoff
    Pages 1-13

  3. A Tractable Variant of the Single Cut or Join Distance with Duplicated Genes

    • Pedro Feijão, Aniket Mane, Cedric Chauve
    Pages 14-30

  4. Generation and Comparative Genomics of Synthetic Dengue Viruses

    • Eli Goz, Yael Tsalenchuck, Rony Oren Benaroya, Shimshi Atar, Tahel Altman, Justin Julander et al.
    Pages 31-52

  5. ASTRAL-III: Increased Scalability and Impacts of Contracting Low Support Branches

    • Chao Zhang, Erfan Sayyari, Siavash Mirarab
    Pages 53-75

  6. Algorithms for Computing the Family-Free Genomic Similarity Under DCJ

    • Diego P. Rubert, Gabriel L. Medeiros, Edna A. Hoshino, Marília D. V. Braga, Jens Stoye, Fábio V. Martinez
    Pages 76-100

  7. New Algorithms for the Genomic Duplication Problem

    • JarosÅ‚aw Paszek, PaweÅ‚ Górecki
    Pages 101-115

  8. TreeShrink: Efficient Detection of Outlier Tree Leaves

    • Uyen Mai, Siavash Mirarab
    Pages 116-140

  9. Rearrangement Scenarios Guided by Chromatin Structure

    • Sylvain Pulicani, Pijus Simonaitis, Eric Rivals, Krister M. Swenson
    Pages 141-155

  10. A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ

    • Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
    Pages 156-178

  11. Orientation of Ordered Scaffolds

    • Sergey Aganezov, Max A. Alekseyev
    Pages 179-196

  12. Finding Teams in Graphs and Its Application to Spatial Gene Cluster Discovery

    • Tizian Schulz, Jens Stoye, Daniel Doerr
    Pages 197-212

  13. Inferring Local Genealogies on Closely Related Genomes

    • Ryan A. Leo Elworth, Luay Nakhleh
    Pages 213-231

  14. Enhancing Searches for Optimal Trees Using SIESTA

    • Pranjal Vachaspati, Tandy Warnow
    Pages 232-255

  15. On the Rank-Distance Median of 3 Permutations

    • Leonid Chindelevitch, João Meidanis
    Pages 256-276

  16. Statistical Consistency of Coalescent-Based Species Tree Methods Under Models of Missing Data

    • Michael Nute, Jed Chou
    Pages 277-297

  17. Fast Heuristics for Resolving Weakly Supported Branches Using Duplication, Transfers, and Losses

    • Han Lai, Maureen Stolzer, Dannie Durand
    Pages 298-320

  18. Back Matter

    Pages 321-321
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Other volumes

  1. Comparative Genomics

Keywords

About this book

This book constitutes the proceedings of the 15th International Workshop Comparative Genomics, RECOMB-CG 2017, held in Barcelona, Spain, in October 2017. The 16 full papers presented were carefully reviewed and selected from 32 submissions. The papers report original research in all areas of Comparative Genomics.

Editors and Affiliations

  • University of Campinas, Campinas, Brazil

    Joao Meidanis

  • Rice University, Houston, USA

    Luay Nakhleh

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