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  • © 2012

Synthetic Gene Networks

Methods and Protocols

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 813)

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Table of contents (23 protocols)

  1. Front Matter

    Pages i-xi
  2. Design Strategies for Synthetic Gene Network

    1. Front Matter

      Pages 1-1
    2. In Silico Implementation of Synthetic Gene Networks

      • Mario Andrea Marchisio
      Pages 3-21
    3. Standardization in Synthetic Biology

      • Kristian M. Müller, Katja M. Arndt
      Pages 23-43
    4. Robust Optimal Design of Synthetic Biological Networks

      • Dirk Lebiedz, Marcel Rehberg, Dominik Skanda
      Pages 45-55
    5. Predicting Synthetic Gene Networks

      • Diego di Bernardo, Lucia Marucci, Filippo Menolascina, Velia Siciliano
      Pages 57-81
  3. Development and Characterization of the Synthetic Biology Toolbox

    1. Front Matter

      Pages 83-83
    2. RNA-Based Networks: Using RNA Aptamers and Ribozymes as Synthetic Genetic Devices

      • Julia E. Weigand, Alexander Wittmann, Beatrix Suess
      Pages 157-168
    3. MicroRNA Circuits for Transcriptional Logic

      • Madeleine Leisner, Leonidas Bleris, Jason Lohmueller, Zhen Xie, Yaakov Benenson
      Pages 169-186
    4. Light-Regulated Gene Expression in Yeast

      • Laszlo Kozma-Bognar, Anita Hajdu, Ferenc Nagy
      Pages 187-193
    5. Light-Controlled Gene Switches in Mammalian Cells

      • Fuzhong Zhang, Kristian M. Müller, G. Andrew Woolley, Katja M. Arndt
      Pages 195-210
  4. Optimizing the Host Systems

    1. Front Matter

      Pages 227-227

About this book

The rapid expansion of synthetic biology is due to the design and construction of synthetic gene networks that have opened many new avenues in fundamental and applied research. Synthetic Gene Networks: Methods and Protocols provides the necessary information to design and construct synthetic gene networks in different host backgrounds. Divided into four convenient sections, this volume focuses on design concepts to devise synthetic gene networks and how mathematical models can be applied to the predictable engineering of desired network features. The volume continues by highlighting the construction and validation of biologic tools, describing strategies to optimize and streamline the host cell for optimized network performance, and covering how optimally designed gene networks can be implemented in a large variety of host cells ranging from bacteria over yeast and insect cells to plant and mammalian cell culture. Written in the successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls.

 

Authoritative and easily accessible, Synthetic Gene Networks: Methods and Protocols serves as an invaluable resource for established biologists, engineers, and computer scientists or novices just entering into the rapidly growing field of synthetic biology

Editors and Affiliations

  • Inst. Biologie II, Zentrum für Biologische Signalstudien, Universität Freiburg, Freiburg, Germany

    Wilfried Weber

  • Dept. Ingenieurwissenschaften, Biosysteme (BSSE), ETH Zürich, Basel, Switzerland

    Martin Fussenegger

Bibliographic Information

  • Book Title: Synthetic Gene Networks

  • Book Subtitle: Methods and Protocols

  • Editors: Wilfried Weber, Martin Fussenegger

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-61779-412-4

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2012

  • Hardcover ISBN: 978-1-61779-411-7Published: 15 November 2011

  • Softcover ISBN: 978-1-4939-6224-2Published: 23 August 2016

  • eBook ISBN: 978-1-61779-412-4Published: 16 November 2011

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XI, 393

  • Number of Illustrations: 64 b/w illustrations, 3 illustrations in colour

  • Topics: Bioinformatics, Systems Biology

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access