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  • © 2014

Stem Cell Transcriptional Networks

Methods and Protocols

  • Includes cutting-edge methods and protocols for the interrogation of stem cell transcriptional networks
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 1150)

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Table of contents (19 protocols)

  1. Front Matter

    Pages i-x
  2. Visual Analysis and Interpretation of Large-Scale Interaction Networks

    1. Front Matter

      Pages 113-113
    2. Visualization and Clustering of High-Dimensional Transcriptome Data Using GATE

      • Patrick S. Stumpf, Ben D. MacArthur
      Pages 131-139
    3. Interpreting and Visualizing ChIP-seq Data with the seqMINER Software

      • Tao Ye, Sarina Ravens, Arnaud R. Krebs, Làszlò Tora
      Pages 141-152
  3. Transcriptional Networks in Embryonic and Adult Stem Cell

    1. Front Matter

      Pages 161-161
  4. Embryo Culture and Derivation of Stem Cells

    1. Front Matter

      Pages 189-189
  5. Transcriptional Programs that Promote Self-Renewal, Reprogramming, and Transdifferentiation

    1. Front Matter

      Pages 213-213

About this book

Stem Cell Transcriptional Networks: Methods and Protocols collects techniques used to increase our understanding of the underlying transcriptional programs of stem cells that promote self-renewal and differentiation. The volume opens with a section on next-generation sequencing library preparation and data analysis. Continuing with a collection of protocols on visual analysis and interpretation of large-scale interaction networks, this detailed compilation features transcriptional networks in embryonic and adult stem cells, embryo culture and derivation of stem cells, as well as transcriptional programs that promote self-renewal, reprogramming, and transdifferentiation. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials, step-by-step, readily reproducible protocols and tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Stem Cell Transcriptional Networks: Methods and Protocols aims to provide a key resource for biologists seeking to interrogate these vital networks.

Editors and Affiliations

  • Systems Biology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, USA

    Benjamin L. Kidder

Bibliographic Information

  • Book Title: Stem Cell Transcriptional Networks

  • Book Subtitle: Methods and Protocols

  • Editors: Benjamin L. Kidder

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-0512-6

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media New York 2014

  • Hardcover ISBN: 978-1-4939-0511-9Published: 18 April 2014

  • Softcover ISBN: 978-1-4939-5406-3Published: 23 August 2016

  • eBook ISBN: 978-1-4939-0512-6Published: 17 April 2014

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: X, 286

  • Number of Illustrations: 8 b/w illustrations, 142 illustrations in colour

  • Topics: Cell Biology, Stem Cells

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access