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Computational Systems-Biology and Bioinformatics

First International Conference, CSBio 2010, Bangkok, Thailand, November 3-5, 2010, Proceedings

  • Conference proceedings
  • © 2010

Overview

Editors:
  1. Jonathan H. Chan

    1. School of Information Technology, King Mongkut’s University of Technology Thonburi, Bangkok, Thailand

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  2. Yew-Soon Ong

    1. School of Computer Engineering, Nanyang Technological University, Singapore

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    You can also search for this editor in PubMed   Google Scholar

  3. Sung-Bae Cho

    1. Dept. of Computer Science, Yonsei University, Seoul, South Korea

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Communications in Computer and Information Science (CCIS, volume 115)

Included in the following conference series:

Conference proceedings info: CSBio 2010.

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Table of contents (19 papers)

  1. Front Matter

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  2. Session 1. Modeling and Simulation of Biological Processes

    1. A Formal Model for Gene Regulatory Networks with Time Delays

      • Jean-Paul Comet, Jonathan Fromentin, Gilles Bernot, Olivier Roux
      Pages 1-13

    2. Modelling fim Expression in Escherichia Coli K12

      • Patrick de Vries, Colin G. Johnson, Ian C. Blomfield
      Pages 14-25

    3. Study of the Structural Pathology Caused by CYP2C9 Polymorphisms towards Flurbiprofen Metabolism Using Molecular Dynamics Simulation

      • Yuranat Saikatikorn, Panida Lertkiatmongkol, Anunchai Assawamakin, Marasri Ruengjitchatchawalya, Sissades Tongsima
      Pages 26-35

    4. 3D Structure Modeling of a Transmembrane Protein, Fatty Acid Elongase

      • Sansai Chumningan, Natapol Pornputtapong, Kobkul Laoteng, Supapon Cheevadhanarak, Chinae Thammarongtham
      Pages 36-45

  3. Session 2. Gene Expression Analysis

    1. Sequential Application of Feature Selection and Extraction for Predicting Breast Cancer Aggressiveness

      • Jonatan Taminau, Stijn Meganck, Cosmin Lazar, David Y. Weiss-Solis, Alain Coletta, Nic Walker et al.
      Pages 46-57

    2. On Assigning Individuals from Cryptic Population Structures to Optimal Predicted Subpopulations: An Empirical Evaluation of Non-parametric Population Structure Analysis Techniques

      • Pornchalearm Deejai, Anunchai Assawamakin, Pongsakorn Wangkumhang, Kanokwan Poomputsa, Sissades Tongsima
      Pages 58-70

    3. Extended Constraint-Based Boolean Analysis: A Computational Method in Genetic Network Inference

      • Somkid Bumee, Chalothorn Liamwirat, Treenut Saithong, Asawin Meechai
      Pages 71-82

    4. Mining LINE-1 Characteristics That Mediate Gene Expression

      • Naruemon Pratanwanich, Apiwat Mutirangura, Chatchawit Aporntewan
      Pages 83-93

  4. Session 3. Biological Sequence Analysis and Network Reconstruction

    1. Mining Regulatory Elements in Non-coding Regions of Arabidopsis thaliana

      • Xi Li, Dianhui Wang
      Pages 94-105

    2. Prediction of Non-coding RNA and Their Targets in Spirulina platensis Genome

      • Tanawut Srisuk, Natapol Pornputtapong, Supapon Cheevadhanarak, Chinae Thammarongtham
      Pages 106-117

    3. Reconstruction of Starch Biosynthesis Pathway in Cassava Using Comparative Genomic Approach

      • Oratai Rongsirikul, Treenut Saithong, Saowalak Kalapanulak, Asawin Meechai, Supapon Cheevadhanarak, Supatcharee Netrphan et al.
      Pages 118-129

  5. Session 4. Bio-data Visualization and Biological Databases

    1. Catalog of Genetic Variations (SNPs and CNVs) and Analysis Tools for Thai Genetic Studies

      • Sattara Hattirat, Chumpol Ngamphiw, Anunchai Assawamakin, Jonathan Chan, Sissades Tongsima
      Pages 130-140

    2. The Genome Atlas Resource

      • Matloob Qureshi, Eva Rotenberg, Hans-Henrik Stærfeldt, Lena Hansson, David W. Ussery
      Pages 141-150

    3. INVERTER: INtegrated Variable numbER Tandem rEpeat findeR

      • Adrianto Wirawan, Chee Keong Kwoh, Li Yang Hsu, Tse Hsien Koh
      Pages 151-164

    4. Design of an Enterobacteriaceae Pan-Genome Microarray Chip

      • Oksana Lukjancenko, David W. Ussery
      Pages 165-179

  6. Session 5. Medical and Biomedical Informatics

    1. Multi-objective Particle Swarm Optimisation for Phase Specific Cancer Drug Scheduling

      • Mohammad S. Alam, Saleh Algoul, M. Alamgir Hossain, M. A. Azim Majumder
      Pages 180-192

    2. A Vaccine Strategy for Plant Allergy by RNA Interference – An in Silico Approach

      • Ramya Ramadoss, Chee Keong Kwoh
      Pages 193-207

    3. Unsupervised Algorithms for Population Classification and Ancestry Informative Marker Selection

      • Apaporn Rodpan, Pongsakorn Wangkumhang, Anunchai Assawamakin, Santitham Prom-on, Sissades Tongsima
      Pages 208-216

    4. Genome-Based Screening for Drug Targets Identification: Application to Typhoid Fever

      • Arporn Juntrapirom, Saowalak Kalapanulak, Treenut Saithong
      Pages 217-225
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Other volumes

  1. Computational Systems-Biology and Bioinformatics

Keywords

Editors and Affiliations

  • School of Information Technology, King Mongkut’s University of Technology Thonburi, Bangkok, Thailand

    Jonathan H. Chan

  • School of Computer Engineering, Nanyang Technological University, Singapore

    Yew-Soon Ong

  • Dept. of Computer Science, Yonsei University, Seoul, South Korea

    Sung-Bae Cho

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