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Pattern Recognition in Bioinformatics

5th IAPR International Conference, PRIB 2010, Nijmegen, The Netherlands, September 22-24, 2010, Proceedings

  • Conference proceedings
  • © 2010

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Editors:
  1. Tjeerd M. H. Dijkstra

    1. Institute for Computing and Information Sciences, Radboud University Nijmegen, Nijmegen, The Netherlands

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  2. Evgeni Tsivtsivadze

    1. Institute for Computing and Information Sciences, Turku Centre for Computer Science, Radboud University Nijmegen, Nijmegen, The Netherlands

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  3. Elena Marchiori

    1. Institute for Computing and Information Sciences, Radboud University Nijmegen, Nijmegen, The Netherlands

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  4. Tom Heskes

    1. Institute for Computing and Information Sciences, Radboud University Nijmegen, Nijmegen, The Netherlands

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6282)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: PRIB 2010.

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Table of contents (38 papers)

  1. Front Matter

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  2. Classification of Biological Sequences

    1. Front Matter

      Pages 1-1
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    2. Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger

      • Bastiaan A. van den Berg, Jurgen F. Nijkamp, Marcel J. T. Reinders, Liang Wu, Herman J. Pel, Johannes A. Roubos et al.
      Pages 3-14

    3. Machine Learning Study of DNA Binding by Transcription Factors from the LacI Family

      • Gennady G. Fedonin, Mikhail S. Gelfand
      Pages 15-26

    4. Joint Loop End Modeling Improves Covariance Model Based Non-coding RNA Gene Search

      • Jennifer Smith
      Pages 27-37

    5. Structured Output Prediction of Anti-cancer Drug Activity

      • Hongyu Su, Markus Heinonen, Juho Rousu
      Pages 38-49

    6. SLiMSearch: A Webserver for Finding Novel Occurrences of Short Linear Motifs in Proteins, Incorporating Sequence Context

      • Norman E. Davey, Niall J. Haslam, Denis C. Shields, Richard J. Edwards
      Pages 50-61

    7. Towards 3D Modeling of Interacting TM Helix Pairs Based on Classification of Helix Pair Sequence

      • Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska
      Pages 62-73

    8. Optimization Algorithms for Identification and Genotyping of Copy Number Polymorphisms in Human Populations

      • Gökhan YavaÅŸ, Mehmet Koyutürk, Thomas LaFramboise
      Pages 74-85

    9. Preservation of Statistically Significant Patterns in Multiresolution 0-1 Data

      • Prem Raj Adhikari, Jaakko Hollmén
      Pages 86-97

    10. Novel Machine Learning Methods for MHC Class I Binding Prediction

      • Christian Widmer, Nora C. Toussaint, Yasemin Altun, Oliver Kohlbacher, Gunnar Rätsch
      Pages 98-109

  3. Unsupervised Learning Methods for Biological Sequences

    1. Front Matter

      Pages 111-111
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    2. SIMCOMP: A Hybrid Soft Clustering of Metagenome Reads

      • Shruthi Prabhakara, Raj Acharya
      Pages 113-124

    3. The Complexity and Application of Syntactic Pattern Recognition Using Finite Inductive Strings

      • Elijah Myers, Paul S. Fisher, Keith Irwin, Jinsuk Baek, Joao Setubal
      Pages 125-136

    4. An Algorithm to Find All Identical Motifs in Multiple Biological Sequences

      • Ashish Kishor Bindal, R. Sabarinathan, J. Sridhar, D. Sherlin, K. Sekar
      Pages 137-148

    5. Discovery of Non-induced Patterns from Sequences

      • Andrew K. C. Wong, Dennis Zhuang, Gary C. L. Li, En-Shiun Annie Lee
      Pages 149-160

    6. Exploring Homology Using the Concept of Three-State Entropy Vector

      • Armando J. Pinho, Sara P. Garcia, Paulo J. S. G. Ferreira, Vera Afreixo, Carlos A. C. Bastos, António J. R. Neves et al.
      Pages 161-170

    7. A Maximum-Likelihood Formulation and EM Algorithm for the Protein Multiple Alignment Problem

      • Valentina Sulimova, Nikolay Razin, Vadim Mottl, Ilya Muchnik, Casimir Kulikowski
      Pages 171-182

    8. Polynomial Supertree Methods Revisited

      • Malte Brinkmeyer, Thasso Griebel, Sebastian Böcker
      Pages 183-194

    9. Enhancing Graph Database Indexing by Suffix Tree Structure

      • Vincenzo Bonnici, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti, Dennis Shasha
      Pages 195-203
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  1. Pattern Recognition in Bioinformatics

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Editors and Affiliations

  • Institute for Computing and Information Sciences, Radboud University Nijmegen, Nijmegen, The Netherlands

    Tjeerd M. H. Dijkstra, Elena Marchiori, Tom Heskes

  • Institute for Computing and Information Sciences, Turku Centre for Computer Science, Radboud University Nijmegen, Nijmegen, The Netherlands

    Evgeni Tsivtsivadze

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