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Comparative Genomics

RECOMB 2006 International Workshop, RECOMB-CG 2006, Montreal, Canada, September 24-26, 2006, Proceedings

  • Conference proceedings
  • © 2006

Overview

Editors:
  1. Guillaume Bourque

    1. Genome Institute of Singapore, Republic of Singapore

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    You can also search for this editor in PubMed   Google Scholar

  2. Nadia El-Mabrouk

    1. DIRO, Université de Montréal, Canada

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 4205)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RCG 2006.

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Table of contents (17 papers)

  1. Front Matter

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  2. Reconstructing Domain Compositions of Ancestral Multi-domain Proteins

    • Behshad Behzadi, Martin Vingron
    Pages 1-10

  3. Domain Architecture in Homolog Identification

    • N. Song, R. D. Sedgewick, D. Durand
    Pages 11-23

  4. Inferring Positional Homologs with Common Intervals of Sequences

    • Guillaume Blin, Annie Chateau, Cedric Chauve, Yannick Gingras
    Pages 24-38

  5. On Genome Evolution with Accumulated Change and Innovation

    • Damian Wójtowicz, Jerzy Tiuryn
    Pages 39-50

  6. Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes

    • Wei Xu, Chunfang Zheng, David Sankoff
    Pages 51-62

  7. Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution

    • Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff
    Pages 63-74

  8. How Pseudo-boolean Programming Can Help Genome Rearrangement Distance Computation

    • Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Stéphane Vialette
    Pages 75-86

  9. Sorting by Translocations Via Reversals Theory

    • Michal Ozery-Flato, Ron Shamir
    Pages 87-98

  10. Inferring Gene Orders from Gene Maps Using the Breakpoint Distance

    • Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk
    Pages 99-112

  11. Ordering Partially Assembled Genomes Using Gene Arrangements

    • Éric Gaul, Mathieu Blanchette
    Pages 113-128

  12. Evolution of Tandemly Repeated Sequences Through Duplication and Inversion

    • Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, Olivier Gascuel
    Pages 129-140

  13. A PQ Framework for Reconstructions of Common Ancestors and Phylogeny

    • Laxmi Parida
    Pages 141-155

  14. Intron Loss Dynamics in Mammals

    • Jasmin Coulombe-Huntington, Jacek Majewski
    Pages 156-170

  15. Finding Maximum Likelihood Indel Scenarios

    • Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette
    Pages 171-185

  16. Conservation Patterns in cis-Elements Reveal Compensatory Mutations

    • Perry Evans, Greg Donahue, Sridhar Hannenhalli
    Pages 186-199

  17. Transcription Factor Centric Discovery of Regulatory Elements in Mammalian Genomes Using Alignment-Independent Conservation Maps

    • Nilanjana Banerjee, Andrea Califano
    Pages 200-214

  18. Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer

    • Cuong Than, Derek Ruths, Hideki Innan, Luay Nakhleh
    Pages 215-229

  19. Back Matter

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Keywords

Reviews

From the reviews:

"Comparative genomics is an exciting new field of bioinformatics dealing with problems of vital importance for many areas in biology. … This volume contains the 17 fully refereed papers presented at the fourth meeting, held in Montreal in September 2006. … I consider this book essential for libraries aiming to support research in any field of bioinformatics." (N. Sapidis, ACM Computing Reviews, Vol. 49 (4), April, 2008)

Editors and Affiliations

  • Genome Institute of Singapore, Republic of Singapore

    Guillaume Bourque

  • DIRO, Université de Montréal, Canada

    Nadia El-Mabrouk

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