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  • © 2010

Bioinformatics Methods in Clinical Research

Editors:

  • Fully updated overview on machine learning techniques applied to biological problems
  • Includes detailed information about current standards for a number of clinical diseases
  • Presents details on data analysis strategies in genomics, transcriptomics, proteomics and metabolomics
  • Summarizes statistical methods and tools for enrichment/depletion analysis
  • Provides a comprehensive coverage of biomedical text mining
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 593)

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Table of contents (16 protocols)

  1. Front Matter

    Pages i-x
  2. Introduction to Omics

    • Ewa Gubb, Rune Matthiesen
    Pages 1-23
  3. Machine Learning: An Indispensable Tool in Bioinformatics

    • Iñaki Inza, Borja Calvo, Rubén Armañanzas, Endika Bengoetxea, Pedro Larrañaga, José A. Lozano
    Pages 25-48
  4. SNP-PHAGE: High-Throughput SNP Discovery Pipeline

    • Ana M. Aransay, Rune Matthiesen, Manuela M. Regueiro
    Pages 49-65
  5. R Classes and Methods for SNP Array Data

    • Robert B. Scharpf, Ingo Ruczinski
    Pages 67-79
  6. Overview on Techniques in Cluster Analysis

    • Itziar Frades, Rune Matthiesen
    Pages 81-107
  7. Nonalcoholic Steatohepatitis, Animal Models, and Biomarkers: What Is New?

    • Usue Ariz, Jose Maria Mato, Shelly C. Lu, Maria L. Martínez Chantar
    Pages 109-136
  8. Biomarkers in Breast Cancer

    • María dM. Vivanco
    Pages 137-156
  9. Genome-Wide Proximal Promoter Analysis and Interpretation

    • Elizabeth Guruceaga, Victor Segura, Fernando J. Corrales, Angel Rubio
    Pages 157-174
  10. Proteomics Facing the Combinatorial Problem

    • Rune Matthiesen, António Amorim
    Pages 175-186
  11. Computational Methods for Analysis of Two-Dimensional Gels

    • Gorka Lasso, Rune Matthiesen
    Pages 231-262
  12. Mass Spectrometry in Epigenetic Research

    • Hans Christian Beck
    Pages 263-282
  13. Computational Approaches to Metabolomics

    • David S. Wishart
    Pages 283-313
  14. Analysis of Biological Processes and Diseases Using Text Mining Approaches

    • Martin Krallinger, Florian Leitner, Alfonso Valencia
    Pages 341-382
  15. Back Matter

    Pages 383-387

About this book

Integrated bioinformatics solutions have become increasingly valuable in past years, as technological advances have allowed researchers to consider the potential of omics for clinical diagnosis, prognosis, and therapeutic purposes, and as the costs of such techniques have begun to lessen. In Bioinformatics Methods in Clinical Research, experts examine the latest developments impacting clinical omics, and describe in great detail the algorithms that are currently used in publicly available software tools. Chapters discuss statistics, algorithms, automated methods of data retrieval, and experimental consideration in genomics, transcriptomics, proteomics, and metabolomics. Composed in the highly successful Methods in Molecular Biology™ series format, each chapter contains a brief introduction, provides practical examples illustrating methods, results, and conclusions from data mining strategies wherever possible, and includes a Notes section which shares tips on troubleshooting and avoiding known pitfalls.

Informative and ground-breaking, Bioinformatics Methods in Clinical Research establishes a much-needed bridge between theory and practice, making it an indispensable resource for bioinformatics researchers.

Reviews

From the reviews:

“This volume of Methods in Molecular Biology provides an overview of the recent improvements in the use of bioinformatics in clinical research. … All chapters provide pertinent examples. … The book is intended primarily for scientists involved in biomedical informatics (computational biologists, biostatisticians, computer scientists) who are active in the field of clinical research. This includes both first-time and seasoned students and biomedical researchers who are interested in using bioinformatics. … It also presents a number of valuable approaches currently in use.” (Ruben Mestril, Doody’s Review Service, April, 2010)

“This book ‘Bioinformatics Methods in Clinical Research edited by Rune Matthiesen’ contains sixteen chapters, and results from scientific cooperation of academics, specialists in the main areas of investigation on bioinformatics methods, and applications in clinical research from centers and universities of Europe such as Denmark, Spain, Portugal as well as Canada and the United States of North America. … several specific fields are discussed including biomarkers in breast cancer and computational methods for two-dimensional analyses in gels.” (Sílvia Regina Cavani Jorge Santos, Brazilian Journal of Pharmaceutical Sciences, Spring, 2011)

Editors and Affiliations

  • Inst. Patologia e Imunologia Molecular, Universidade do Porto, Porto, Portugal

    Rune Matthiesen

Bibliographic Information

  • Book Title: Bioinformatics Methods in Clinical Research

  • Editors: Rune Matthiesen

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-60327-194-3

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2010

  • Hardcover ISBN: 978-1-60327-193-6Published: 14 December 2009

  • Softcover ISBN: 978-1-61779-670-8Published: 25 February 2012

  • eBook ISBN: 978-1-60327-194-3Published: 02 December 2009

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: X, 390

  • Number of Illustrations: 63 b/w illustrations

  • Topics: Bioinformatics, Systems Biology

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 159.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access