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  • © 2017

Algorithms for Next-Generation Sequencing Data

Techniques, Approaches, and Applications

Editors:

  • First consolidated description of techniques and applications

  • Key technology will help to decode life's mysteries, detect pathogens, make better crops, and improve quality of life

  • Valuable for researchers, practitioners and students engaged with bioinformatics, computer science, mathematics, statistics and life sciences

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Table of contents (14 chapters)

  1. Front Matter

    Pages i-xiii
  2. Indexing, Compression, and Storage of NGS Data

    1. Front Matter

      Pages 1-1
    2. Algorithms for Indexing Highly Similar DNA Sequences

      • Nadia Ben Nsira, Thierry Lecroq, Mourad Elloumi
      Pages 3-39
    3. Full-Text Indexes for High-Throughput Sequencing

      • David Weese, Enrico Siragusa
      Pages 41-75
    4. Searching and Indexing Circular Patterns

      • Costas S. Iliopoulos, Solon P. Pissis, M. Sohel Rahman
      Pages 77-90
    5. De Novo NGS Data Compression

      • Gaetan Benoit, Claire Lemaitre, Guillaume Rizk, Erwan Drezen, Dominique Lavenier
      Pages 91-115
    6. Cloud Storage-Management Techniques for NGS Data

      • Evangelos Theodoridis
      Pages 117-128
  3. Error Correction in NGS Data

    1. Front Matter

      Pages 129-129
    2. Probabilistic Models for Error Correction of Nonuniform Sequencing Data

      • Marcel H. Schulz, Ziv Bar-Joseph
      Pages 131-145
    3. DNA-Seq Error Correction Based on Substring Indices

      • David Weese, Marcel H. Schulz, Hugues Richard
      Pages 147-166
    4. Error Correction in Methylation Profiling From NGS Bisulfite Protocols

      • Guillermo Barturen, José L. Oliver, Michael Hackenberg
      Pages 167-183
  4. Alignment of NGS Data

    1. Front Matter

      Pages 185-185
    2. String-Matching and Alignment Algorithms for Finding Motifs in NGS Data

      • Giulia Fiscon, Emanuel Weitschek
      Pages 235-264
  5. Assembly of NGS Data

    1. Front Matter

      Pages 265-265
    2. The Contig Assembly Problem and Its Algorithmic Solutions

      • Géraldine Jean, Andreea Radulescu, Irena Rusu
      Pages 267-298
    3. An Efficient Approach to Merging Paired-End Reads and Incorporation of Uncertainties

      • Tomáš Flouri, Jiajie Zhang, Lucas Czech, Kassian Kobert, Alexandros Stamatakis
      Pages 299-325
    4. Assembly-Free Techniques for NGS Data

      • Matteo Comin, Michele Schimd
      Pages 327-355

About this book

The 14 contributed chapters in this book survey the most recent developments in high-performance algorithms for NGS data, offering fundamental insights and technical information specifically on indexing, compression and storage; error correction; alignment; and assembly. 

The book will be of value to researchers, practitioners and students engaged with bioinformatics, computer science, mathematics, statistics and life sciences.

Editors and Affiliations

  • LaTICE, Tunis, Tunisia

    Mourad Elloumi

Bibliographic Information

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 159.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access