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  • Conference proceedings
  • © 2019

Computational Methods in Systems Biology

17th International Conference, CMSB 2019, Trieste, Italy, September 18–20, 2019, Proceedings

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 11773)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): CMSB: International Conference on Computational Methods in Systems Biology

Conference proceedings info: CMSB 2019.

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Table of contents (32 papers)

  1. Front Matter

    Pages i-xi
  2. Regular Papers

    1. Front Matter

      Pages 1-1
    2. Sequential Reprogramming of Boolean Networks Made Practical

      • Hugues Mandon, Cui Su, Stefan Haar, Jun Pang, Loïc Paulevé
      Pages 3-19
    3. Sequential Reprogramming of Biological Network Fate

      • Jérémie Pardo, Sergiu Ivanov, Franck Delaplace
      Pages 20-41
    4. Control Variates for Stochastic Simulation of Chemical Reaction Networks

      • Michael Backenköhler, Luca Bortolussi, Verena Wolf
      Pages 42-59
    5. Effective Computational Methods for Hybrid Stochastic Gene Networks

      • Guilherme C. P. Innocentini, Fernando Antoneli, Arran Hodgkinson, Ovidiu Radulescu
      Pages 60-77
    6. On Chemical Reaction Network Design by a Nested Evolution Algorithm

      • Elisabeth Degrand, Mathieu Hemery, François Fages
      Pages 78-95
    7. Extending a Hodgkin-Huxley Model for Larval Drosophila Muscle Excitability via Particle Swarm Fitting

      • Paul Piho, Filip Margetiny, Ezio Bartocci, Richard R. Ribchester, Jane Hillston
      Pages 120-139
    8. Cell Volume Distributions in Exponentially Growing Populations

      • Pavol Bokes, Abhyudai Singh
      Pages 140-154
    9. Transient Memory in Gene Regulation

      • Calin Guet, Thomas A. Henzinger, Claudia Igler, Tatjana Petrov, Ali Sezgin
      Pages 155-187
    10. A Logic-Based Learning Approach to Explore Diabetes Patient Behaviors

      • Josephine Lamp, Simone Silvetti, Marc Breton, Laura Nenzi, Lu Feng
      Pages 188-206
    11. Reachability Design Through Approximate Bayesian Computation

      • Mahmoud Bentriou, Paolo Ballarini, Paul-Henry Cournède
      Pages 207-223
    12. Fast Enumeration of Non-isomorphic Chemical Reaction Networks

      • Carlo Spaccasassi, Boyan Yordanov, Andrew Phillips, Neil Dalchau
      Pages 224-247
    13. A Large-Scale Assessment of Exact Model Reduction in the BioModels Repository

      • Isabel Cristina Pérez-Verona, Mirco Tribastone, Andrea Vandin
      Pages 248-265
    14. Computing Difference Abstractions of Metabolic Networks Under Kinetic Constraints

      • Emilie Allart, Joachim Niehren, Cristian Versari
      Pages 266-285
  3. Tool Papers

    1. Front Matter

      Pages 287-287
    2. The Kappa Simulator Made Interactive

      • Pierre Boutillier
      Pages 296-301
    3. Biochemical Reaction Networks with Fuzzy Kinetic Parameters in Snoopy

      • George Assaf, Monika Heiner, Fei Liu
      Pages 302-307

Other Volumes

  1. Computational Methods in Systems Biology

About this book

This book constitutes the refereed proceedings of the 17th International Conference on Computational Methods in Systems Biology, CMSB 2019, held in Trieste, Italy, in September 2019.

The 14 full papers, 7 tool papers and 11 posters were carefully reviewed and selected from 53 submissions. Topics of interest include formalisms for modeling biological processes; models and their biological applications; frameworks for model verification, validation, analysis, and simulation of biological systems; high-performance computational systems biology and parallel implementations; model inference from experimental data; model integration from biological databases; multi-scale modeling and analysis methods; computational approaches for synthetic biology; and case studies in systems and synthetic biology.


Editors and Affiliations

  • University of Trieste, Trieste, Italy

    Luca Bortolussi

  • University of Edinburgh, Edinburgh, UK

    Guido Sanguinetti

Bibliographic Information

Buy it now

Buying options

eBook USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access